Pairwise fitting emdb-1252 on pdb-3j5v by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-3j5v by gmfit(PID:1773884).





RANK[1] Corr.Coeff:0.262

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-3j5v)

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b'PHUZ201 FILAMENT                                                      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.262
0.258
0.256
0.255
0.250
0.250
0.248
0.238
0.237
0.232







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j5v"(PDB-format) or 
 "3j5v"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.223484,-0.617111,-0.754473 147.489877 center 0,0,0 model #1
move 181.345290,-6.985131,-260.106332 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j5v)]

[Download the target GMM(emdb 1252)]

[Download gmfit result file(1773884)]