Pairwise fitting emdb-1252 on pdb-3j0j by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-3j0j by gmfit(PID:168250).





RANK[1] Corr.Coeff:0.570

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

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Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-3j0j)

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b'FITTED ATOMIC MODELS OF THERMUS THERMOPHILUS V-ATPASE SUBUNITS INTO   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.570
0.564
0.540
0.508
0.470
0.458
0.450
0.444
0.432
0.432







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j0j"(PDB-format) or 
 "3j0j"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.978752,-0.189361,-0.078662 92.180344 center 0,0,0 model #1
move -96.366252,214.820853,-146.713700 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j0j)]

[Download the target GMM(emdb 1252)]

[Download gmfit result file(168250)]