Pairwise fitting emdb-1252 on pdb-3ddx by gmfit










Pairwise fitting of target emdb-1252 on reference pdb-3ddx by gmfit(PID:4152599).





RANK[1] Corr.Coeff:0.521

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1252)

display:



color:



Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1252)]







REFERENCE(pdb-3ddx)

display:



color:


b'HK97 BACTERIOPHAGE CAPSID EXPANSION INTERMEDIATE-II MODEL             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.521
0.517
0.439
0.438
0.401
0.395
0.385
0.368
0.363
0.333







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3ddx"(PDB-format) or 
 "3ddx"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1252.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.041180,0.168573,-0.984829 129.387581 center 0,0,0 model #1
move 29.916498,360.922001,142.451265 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3ddx)]

[Download the target GMM(emdb 1252)]

[Download gmfit result file(4152599)]