Pairwise fitting emdb-1252 on pdb-3ddx by gmfit



Pairwise fitting of target emdb-1252 on reference pdb-3ddx by gmfit(PID:4152599).

RANK[1] Corr.Coeff:0.521 [JSmol] [Molmil]
TARGET(emdb-1252)
display:
color:
Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1252)]
REFERENCE(pdb-3ddx)
display:
color:
b'HK97 BACTERIOPHAGE CAPSID EXPANSION INTERMEDIATE-II MODEL ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.521 0.517 0.439 0.438 0.401 0.395 0.385 0.368 0.363 0.333

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3ddx"(PDB-format) or "3ddx"(mmCIF-format), and read it.
  2. Download the Target map "emd_1252.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.041180,0.168573,-0.984829 129.387581 center 0,0,0 model #1
    move 29.916498,360.922001,142.451265 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3ddx)] [Download the target GMM(emdb 1252)] [Download gmfit result file(4152599)]