Pairwise fitting emdb-1183 on pdb-1d3e by gmfit










Pairwise fitting of target emdb-1183 on reference pdb-1d3e by gmfit(PID:661064).





RANK[1] Corr.Coeff:0.016

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1183)

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Structural and functional insights into the interaction of echoviruses and decay-accelerating factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1183)]







REFERENCE(pdb-1d3e)

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color:


b'CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.016
0.016
0.016
0.016
0.016
0.016
0.016
0.016
0.016
0.016







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1d3e"(PDB-format) or 
 "1d3e"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1183.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.397911,-0.913340,-0.086463 97.289567 center 0,0,0 model #1
move 28.857983,19.646625,124.802020 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!