Pairwise fitting emdb-1157 on pdb-3j4b by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-3j4b by gmfit(PID:4096771).





RANK[1] Corr.Coeff:0.579

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

display:



color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-3j4b)

display:



color:


b'STRUCTURE OF T7 GATEKEEPER PROTEIN (GP11)                             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.579
0.526
0.524
0.524
0.464
0.462
0.446
0.445
0.353
0.352







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j4b"(PDB-format) or 
 "3j4b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.469012,0.838783,0.276534 163.746959 center 0,0,0 model #1
move 150.706544,33.674619,244.250173 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j4b)]

[Download the target GMM(emdb 1157)]

[Download gmfit result file(4096771)]