Pairwise fitting emdb-1157 on pdb-1yxn by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-1yxn by gmfit(PID:4194228).





RANK[1] Corr.Coeff:0.481

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

display:



color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-1yxn)

display:



color:


b'PSEUDO-ATOMIC MODEL OF A FIBERLESS ISOMETRIC VARIANT OF BACTERIOPHAGE ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.481
0.408
0.390
0.388
0.386
0.384
0.372
0.354
0.226
0.214







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1yxn"(PDB-format) or 
 "1yxn"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.508291,-0.128166,0.851595 67.366720 center 0,0,0 model #1
move -44.571872,66.514269,-323.724601 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 1yxn)]

[Download the target GMM(emdb 1157)]

[Download gmfit result file(4194228)]