Pairwise fitting emdb-1090 on pdb-5lmp by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-5lmp by gmfit(PID:271582).

RANK[1] Corr.Coeff:0.684 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-5lmp)
display:
color:
b'STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.684 0.661 0.591 0.564 0.561 0.537 0.505 0.502 0.397 0.389

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5lmp"(PDB-format) or "5lmp"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.636479,0.681524,0.361137 158.481862 center 0,0,0 model #1
    move 195.733758,128.526984,149.437406 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!