Pairwise fitting emdb-1090 on pdb-5lmn by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-5lmn by gmfit(PID:4060743).

RANK[1] Corr.Coeff:0.699 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-5lmn)
display:
color:
b'STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.699 0.680 0.594 0.559 0.557 0.538 0.510 0.499 0.410 0.398

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5lmn"(PDB-format) or "5lmn"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.625288,0.684419,0.374947 156.764852 center 0,0,0 model #1
    move 193.114301,126.947485,147.482373 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5lmn)] [Download the target GMM(emdb 1090)] [Download gmfit result file(4060743)]