Pairwise fitting emdb-1090 on pdb-5lmn by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-5lmn by gmfit(PID:4128847).





RANK[1] Corr.Coeff:0.699

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-5lmn)

display:



color:


b'STRUCTURE OF BACTERIAL 30S-IF1-IF3-MRNA TRANSLATION PRE-INITIATION    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.699
0.680
0.594
0.559
0.557
0.538
0.510
0.499
0.410
0.398







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5lmn"(PDB-format) or 
 "5lmn"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.625288,0.684419,0.374947 156.764852 center 0,0,0 model #1
move 193.114301,126.947485,147.482373 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5lmn)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(4128847)]