Pairwise fitting emdb-1090 on pdb-4a2i by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-4a2i by gmfit(PID:4120625).





RANK[1] Corr.Coeff:0.677

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-4a2i)

display:



color:


b'CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE 30S SUBUNIT IN COMPLEX WITH ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.677
0.615
0.586
0.536
0.524
0.517
0.490
0.467
0.414
0.389







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4a2i"(PDB-format) or 
 "4a2i"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.488759,0.492209,-0.720309 171.918255 center 0,0,0 model #1
move 135.037012,165.141496,215.688694 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4a2i)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(4120625)]