Pairwise fitting emdb-1090 on pdb-4a2i by gmfit



Pairwise fitting of target emdb-1090 on reference pdb-4a2i by gmfit(PID:4120625).

RANK[1] Corr.Coeff:0.677 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(pdb-4a2i)
display:
color:
b'CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE 30S SUBUNIT IN COMPLEX WITH ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.677 0.615 0.586 0.536 0.524 0.517 0.490 0.467 0.414 0.389

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4a2i"(PDB-format) or "4a2i"(mmCIF-format), and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.488759,0.492209,-0.720309 171.918255 center 0,0,0 model #1
    move 135.037012,165.141496,215.688694 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4a2i)] [Download the target GMM(emdb 1090)] [Download gmfit result file(4120625)]