Pairwise fitting emdb-1090 on emdb-8124 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-8124 by gmfit(PID:507223).





RANK[1] Corr.Coeff:0.717

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-8124)

display:



color:


Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.717
0.618
0.617
0.604
0.579
0.557
0.546
0.543
0.449
0.448







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8124.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.281987,-0.650814,-0.704929 23.341159 center 0,0,0 model #1
move 221.475746,135.464389,176.442450 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!