Pairwise fitting emdb-1090 on emdb-6566 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-6566 by gmfit(PID:4089942).





RANK[1] Corr.Coeff:0.563

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

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color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-6566)

display:



color:


The cryo-EM structure of yeast spliceosomal U4/U6.U5 tri-snRNP (improved map for Prp3 region at 3.46 A) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.563
0.527
0.518
0.503
0.493
0.481
0.463
0.418
0.401
0.396







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6566.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.898352,0.315708,-0.305438 102.604917 center 0,0,0 model #1
move 248.704516,238.407968,201.626062 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6566)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(4089942)]