Pairwise fitting emdb-1090 on emdb-6565 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-6565 by gmfit(PID:1246992).





RANK[1] Corr.Coeff:0.535

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-6565)

display:



color:


The cryo-EM structure of yeast spliceosomal U4/U6.U5 tri-snRNP (improved map for Prp8 region at 3.49 A) [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.535
0.527
0.502
0.501
0.495
0.491
0.452
0.425
0.397
0.395







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6565.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.205816,-0.033294,0.978024 121.864519 center 0,0,0 model #1
move 245.444382,270.998178,221.250462 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!