Pairwise fitting emdb-1090 on emdb-5909 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-5909 by gmfit(PID:4128829).





RANK[1] Corr.Coeff:0.679

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-5909)

display:



color:


Cryo-EM structure of high salt treated immature 30S ribosomal subunit from rsga and rbfa deleted E.coli strain [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.679
0.638
0.562
0.542
0.519
0.485
0.470
0.433
0.389
0.298







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5909.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.411737,0.173076,-0.894716 177.096766 center 0,0,0 model #1
move -43.594178,28.548646,32.104996 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5909)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(4128829)]