Pairwise fitting emdb-1090 on emdb-4080 by gmfit



Pairwise fitting of target emdb-1090 on reference emdb-4080 by gmfit(PID:4105643).

RANK[1] Corr.Coeff:0.729 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(emdb-4080)
display:
color:
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4) [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.729 0.692 0.610 0.561 0.547 0.538 0.521 0.521 0.465 0.378

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_4080.map.gz", and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.622476,0.705420,0.338979 156.081911 center 0,0,0 model #1
    move 192.084025,121.727884,151.349443 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 4080)] [Download the target GMM(emdb 1090)] [Download gmfit result file(4105643)]