Pairwise fitting emdb-1090 on emdb-3049 by gmfit



Pairwise fitting of target emdb-1090 on reference emdb-3049 by gmfit(PID:4073861).

RANK[1] Corr.Coeff:0.576 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(emdb-3049)
display:
color:
Structure of a partial yeast 48S preinitiation complex in open conformation [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.576 0.519 0.515 0.514 0.510 0.498 0.461 0.446 0.422 0.362

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3049.map.gz", and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.395850,-0.251988,0.883065 169.350481 center 0,0,0 model #1
    move 164.537368,232.417396,228.047114 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3049)] [Download the target GMM(emdb 1090)] [Download gmfit result file(4073861)]