Pairwise fitting emdb-1090 on emdb-3049 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-3049 by gmfit(PID:4120916).





RANK[1] Corr.Coeff:0.576

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-3049)

display:



color:


Structure of a partial yeast 48S preinitiation complex in open conformation [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.576
0.519
0.515
0.514
0.510
0.498
0.461
0.446
0.422
0.362







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3049.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.395850,-0.251988,0.883065 169.350481 center 0,0,0 model #1
move 164.537368,232.417396,228.047114 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3049)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(4120916)]