Pairwise fitting emdb-1090 on emdb-2658 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-2658 by gmfit(PID:1862487).





RANK[1] Corr.Coeff:0.456

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-2658)

display:



color:


20S pre1-1 proteasomal complex from S. cerevisiae carrying the dedicated assembly chaperones Pba1 and Pba2 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.456
0.456
0.449
0.447
0.445
0.443
0.441
0.439
0.433
0.383







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2658.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.594678,-0.442536,0.671208 171.750644 center 0,0,0 model #1
move 138.827868,204.864995,105.524180 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2658)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(1862487)]