Pairwise fitting emdb-1090 on emdb-2658 by gmfit



Pairwise fitting of target emdb-1090 on reference emdb-2658 by gmfit(PID:4095977).

RANK[1] Corr.Coeff:0.441 [JSmol] [Molmil]
TARGET(emdb-1090)
display:
color:
Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1090)]
REFERENCE(emdb-2658)
display:
color:
20S pre1-1 proteasomal complex from S. cerevisiae carrying the dedicated assembly chaperones Pba1 and Pba2 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.441 0.418 0.418 0.411 0.410 0.404 0.389 0.360 0.254 0.254

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2658.map.gz", and read it.
  2. Download the Target map "emd_1090.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.679757,0.652206,-0.335496 91.970647 center 0,0,0 model #1
    move 150.738799,88.625252,124.890331 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2658)] [Download the target GMM(emdb 1090)] [Download gmfit result file(4095977)]