Pairwise fitting emdb-1022 on pdb-3j95 by gmfit










Pairwise fitting of target emdb-1022 on reference pdb-3j95 by gmfit(PID:4089852).





RANK[1] Corr.Coeff:0.652

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1022)

display:



color:



Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1022)]







REFERENCE(pdb-3j95)

display:



color:


b'STRUCTURE OF ADP-BOUND N-ETHYLMALEIMIDE SENSITIVE FACTOR DETERMINED BY' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.652
0.650
0.648
0.636
0.632
0.630
0.629
0.610
0.472
0.459







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j95"(PDB-format) or 
 "3j95"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1022.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.995273,-0.096870,0.006970 173.429845 center 0,0,0 model #1
move -110.211068,61.550886,106.887511 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j95)]

[Download the target GMM(emdb 1022)]

[Download gmfit result file(4089852)]