Pairwise fitting pdb-4v4v on pdb-4v78 by gmfit










Pairwise fitting of target pdb-4v4v on reference pdb-4v78 by gmfit(PID:8004).





RANK[1] Corr.Coeff:0.935

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(pdb-4v78)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.935
0.798
0.793
0.792
0.780
0.774
0.769
0.768
0.756
0.736







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v78"(PDB-format) or 
 "4v78"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.786166,-0.206899,0.582353 130.768778 center 0,0,0 model #1
move 179.267174,189.525524,179.149922 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v78)]

[Download the target GMM(pdb 4v4v)]

[Download gmfit result file(8004)]