Pairwise fitting emdb-1090 on emdb-6262 by gmfit










Pairwise fitting of target emdb-1090 on reference emdb-6262 by gmfit(PID:3214296).





RANK[1] Corr.Coeff:0.612

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1090)

display:



color:



Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(emdb-6262)

display:



color:


p300 binding with antibody 1 [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.612
0.612
0.578
0.574
0.558
0.554
0.518
0.494
0.493
0.463







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6262.map.gz", and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.452933,0.728244,-0.514307 113.134973 center 0,0,0 model #1
move -76.112525,-45.522505,47.933116 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 6262)]

[Download the target GMM(emdb 1090)]

[Download gmfit result file(3214296)]