Pairwise fitting emdb-5023 on emdb-5807 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-5807 by gmfit(PID:75282).





RANK[1] Corr.Coeff:0.461

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-5807)

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Negative-stain electron microscopy reconstruction of Tetrahymena telomerase (Teb1-f, conformation II) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.461
0.460
0.457
0.454
0.432
0.422
0.420
0.417
0.375
0.309







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5807.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.154841,-0.080394,-0.984663 143.106570 center 0,0,0 model #1
move 8.108372,257.268651,-160.015549 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5807)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(75282)]