Pairwise fitting emdb-5023 on emdb-2664 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-2664 by gmfit(PID:3715710).





RANK[1] Corr.Coeff:0.450

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-2664)

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Structure of SMG1C-UPF1 complex, comprising SMG1 kinase, SMG8, SMG9 and UPF1 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.450
0.447
0.442
0.441
0.416
0.412
0.406
0.403
0.278
0.277







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2664.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.332595,0.805726,-0.490089 122.377216 center 0,0,0 model #1
move -148.548901,-22.062482,277.249898 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2664)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(3715710)]