Pairwise fitting emdb-5168 on pdb-3j9b by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-3j9b by gmfit(PID:2998270).





RANK[3] Corr.Coeff:0.563

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-3j9b)

display:



color:


b'ELECTRON CRYO-MICROSCOPY OF AN RNA POLYMERASE                         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.604
0.581
0.563
0.561
0.560
0.558
0.552
0.552
0.303
0.287







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9b"(PDB-format) or 
 "3j9b"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.318754,-0.838178,0.442553 101.586757 center 0,0,0 model #1
move 167.812240,169.645634,129.045277 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!