Pairwise fitting pdb-1k4r on pdb-1nn8 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-1nn8 by gmfit(PID:2889832).





RANK[4] Corr.Coeff:0.346

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-1nn8)

display:



color:


b'CRYOEM STRUCTURE OF POLIOVIRUS RECEPTOR BOUND TO POLIOVIRUS           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.506
0.450
0.393
0.346
0.340
0.311
0.288
0.231
0.215
0.208







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1nn8"(PDB-format) or 
 "1nn8"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.774257,0.632866,-0.002484 143.495342 center 0,0,0 model #1
move -246.387675,-11.932345,229.046905 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!