Pairwise fitting pdb-1x18 on emdb-2181 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-2181 by gmfit(PID:2861583).





RANK[5] Corr.Coeff:0.541

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-2181)

display:



color:


Electron microscopy map of SOS1 antiporter [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.693
0.627
0.596
0.591
0.541
0.534
0.532
0.454
0.413
0.410







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2181.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.880040,-0.392133,0.267885 83.188631 center 0,0,0 model #1
move 222.464727,127.001680,154.621399 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!