Pairwise fitting pdb-4v5m on emdb-2705 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-2705 by gmfit(PID:2796750).





RANK[4] Corr.Coeff:0.710

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-2705)

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A structural model of the active ribosome-bound membrane protein insertase YidC [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.896
0.759
0.744
0.710
0.704
0.698
0.695
0.689
0.680
0.678







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2705.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.828192,0.195630,0.525192 84.677650 center 0,0,0 model #1
move -2.951303,-1.130959,3.038860 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!