Pairwise fitting pdb-3dg4 on emdb-1261 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-1261 by gmfit(PID:2771334).





RANK[4] Corr.Coeff:0.657

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-1261)

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color:


Following the signal sequence from ribosomal tunnel exit to signal recognition particle. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.731
0.710
0.692
0.657
0.645
0.643
0.642
0.632
0.630
0.628







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1261.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.539370,0.425827,0.726465 160.322270 center 0,0,0 model #1
move 0.954663,-5.275913,-7.815070 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!