Pairwise fitting emdb-1157 on pdb-5kc2 by gmfit










Pairwise fitting of target emdb-1157 on reference pdb-5kc2 by gmfit(PID:2745917).





RANK[7] Corr.Coeff:0.409

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1157)

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color:



ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1157)]







REFERENCE(pdb-5kc2)

display:



color:


b'NEGATIVE STAIN STRUCTURE OF VPS15/VPS34 COMPLEX                       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.589
0.526
0.502
0.499
0.493
0.470
0.409
0.405
0.306
0.296







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5kc2"(PDB-format) or 
 "5kc2"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1157.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.207991,-0.360632,-0.909222 87.543952 center 0,0,0 model #1
move 151.407282,285.664260,13.016315 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!