Pairwise fitting pdb-3dg4 on emdb-2843 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-2843 by gmfit(PID:2738756).





RANK[10] Corr.Coeff:0.652

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg4)

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b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-2843)

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color:


Structural basis for targeting and elongation arrest of Bacillus signal recognition particle [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.902
0.886
0.733
0.712
0.687
0.684
0.680
0.678
0.652
0.652







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2843.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.832601,0.128745,0.538703 121.054254 center 0,0,0 model #1
move -0.904765,2.231593,-7.603264 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!