Pairwise fitting pdb-3dg5 on emdb-8113 by gmfit










Pairwise fitting of target pdb-3dg5 on reference emdb-8113 by gmfit(PID:1360665).





RANK[9] Corr.Coeff:0.691

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(emdb-8113)

display:



color:


Structure of RelA bound to the 70S ribosome (focused classification, TGS domain) [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.901
0.773
0.765
0.737
0.708
0.706
0.700
0.699
0.691
0.681







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_8113.map.gz", and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.182066,0.838261,0.513976 128.964776 center 0,0,0 model #1
move 273.259958,264.980229,269.126504 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!