Pairwise fitting pdb-1x18 on emdb-3125 by gmfit










Pairwise fitting of target pdb-1x18 on reference emdb-3125 by gmfit(PID:1301721).





RANK[5] Corr.Coeff:0.529

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1x18)

display:



color:



b'CONTACT SITES OF ERA GTPASE ON THE THERMUS THERMOPHILUS 30S SUBUNIT   ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1x18)]







REFERENCE(emdb-3125)

display:



color:


Structural basis for specific recognition of single-stranded RNA by toll-like receptor 13 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.592
0.573
0.535
0.533
0.529
0.510
0.487
0.463
0.451
0.428







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3125.map.gz", and read it.

  2.  Download the Target molecule "1x18"(PDB-format) or
  "1x18"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.901203,-0.363741,0.235639 175.554490 center 0,0,0 model #1
move 148.987691,163.511576,127.639573 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!