Pairwise fitting pdb-4v4v on emdb-5943 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-5943 by gmfit(PID:1188769).





RANK[9] Corr.Coeff:0.753

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-5943)

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Cryo-EM Map of a yeast ribosome bound to the TSV IRES (Class I) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.884
0.851
0.791
0.777
0.769
0.764
0.757
0.756
0.753
0.725







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5943.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.185240,0.732267,-0.655340 145.257395 center 0,0,0 model #1
move 211.120155,206.827601,217.567381 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!