Pairwise fitting pdb-4v47 on emdb-5360 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-5360 by gmfit(PID:2899005).





RANK[1] Corr.Coeff:0.904

[JSmol]
[Molmil]


















TARGET(pdb-4v47)




 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-5360)



New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 3 (unrotated 70S ribosome with P-site tRNA) [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.904
0.726
0.714
0.707
0.706
0.697
0.696
0.687
0.667
0.661







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5360.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.062082,-0.867988,-0.492689 6.881539 center 0,0,0 model #1
move 4.732557,-1.454519,3.662510 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!