Pairwise fitting pdb-3dg4 on emdb-2703 by gmfit










Pairwise fitting of target pdb-3dg4 on reference emdb-2703 by gmfit(PID:2787809).





RANK[1] Corr.Coeff:0.777

[JSmol]
[Molmil]


















TARGET(pdb-3dg4)




b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF1-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg4)]







REFERENCE(emdb-2703)



Cryo-EM structure of the mammalian 60S ribosomal subunit in complex with eIF6 [Ngauss:20]



[Download the reference map]





Other Transformations
rank
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Corr.Coeff.
0.777
0.751
0.749
0.747
0.742
0.741
0.723
0.723
0.721
0.709







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2703.map.gz", and read it.

  2.  Download the Target molecule "3dg4"(PDB-format) or
  "3dg4"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.617574,-0.354675,-0.702002 149.043268 center 0,0,0 model #1
move 236.844846,207.460622,205.990845 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!