Pairwise fitting emdb-1090 on pdb-3j7a by gmfit










Pairwise fitting of target emdb-1090 on reference pdb-3j7a by gmfit(PID:2732550).





RANK[1] Corr.Coeff:0.699

[JSmol]
[Molmil]


















TARGET(emdb-1090)




Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1090)]







REFERENCE(pdb-3j7a)



b'CRYO-EM STRUCTURE OF THE PLASMODIUM FALCIPARUM 80S RIBOSOME BOUND TO  ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.699
0.628
0.584
0.539
0.531
0.517
0.508
0.504
0.384
0.379







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j7a"(PDB-format) or 
 "3j7a"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1090.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.256019,-0.058515,-0.964899 16.055033 center 0,0,0 model #1
move 221.195212,239.804115,233.426731 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!