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- PDB-8osi: Genetically encoded green ratiometric calcium indicator FNCaMP in... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8osi | ||||||
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Title | Genetically encoded green ratiometric calcium indicator FNCaMP in calcium-bound state | ||||||
![]() | mNeonGreen,Calmodulin,Protein kinase domain-containing protein | ||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Varfolomeeva, L.A. / Boyko, K.M. / Nikolaeva, A.Y. / Subach, O.M. / Subach, F.V. | ||||||
Funding support | ![]()
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![]() | ![]() Title: FNCaMP, ratiometric green calcium indicator based on mNeonGreen protein. Authors: Subach, O.M. / Varfolomeeva, L. / Vlaskina, A.V. / Agapova, Y.K. / Nikolaeva, A.Y. / Piatkevich, K.D. / Patrushev, M.V. / Boyko, K.M. / Subach, F.V. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 174 KB | Display | ![]() |
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PDB format | ![]() | 138 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 52280.168 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() Gene: blFP-Y3, ABL_02521, ATCC64974_81790, CAN33_002760, ATCC64974_70630, CAN33_0054440 Production host: ![]() ![]() ![]() References: UniProt: A0A1S4NYF2, UniProt: A0A100IBH9, UniProt: A0A254U4M1 | ||||
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#2: Chemical | ChemComp-CR2 / {( | ||||
#3: Chemical | ChemComp-CA / #4: Water | ChemComp-HOH / | ![]() Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.92 Å3/Da / Density % sol: 68.64 % |
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Crystal grow![]() | Temperature: 288 K / Method: vapor diffusion, hanging drop / Details: 0.1 M MMT buffer, pH 8.0, 25% PEG 1500 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 4M / Detector: PIXEL / Date: Feb 25, 2022 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.42→47.95 Å / Num. obs: 31109 / % possible obs: 99.4 % / Redundancy: 16.7 % / CC1/2: 0.994 / Rmerge(I) obs: 0.101 / Rpim(I) all: 0.025 / Rrim(I) all: 0.104 / Χ2: 0.93 / Net I/σ(I): 15.8 / Num. measured all: 520158 |
Reflection shell | Resolution: 2.42→2.51 Å / % possible obs: 96.1 % / Redundancy: 15.3 % / Rmerge(I) obs: 1.437 / Num. measured all: 47835 / Num. unique obs: 3135 / CC1/2: 0.835 / Rpim(I) all: 0.36 / Rrim(I) all: 1.483 / Χ2: 0.81 / Net I/σ(I) obs: 1.7 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 67.15 Å2
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Refinement step | Cycle: 1 / Resolution: 2.42→47.95 Å
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Refine LS restraints |
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