+Open data
-Basic information
Entry | Database: PDB / ID: 7lp4 | ||||||
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Title | Structure of Nedd4L WW3 domain | ||||||
Components | E3 ubiquitin-protein ligase NEDD4-like | ||||||
Keywords | LIGASE / PPxY binding / E3 Ubiquitin ligase / Nedd4L | ||||||
Function / homology | Function and homology information positive regulation of caveolin-mediated endocytosis / RING-type E3 ubiquitin transferase (cysteine targeting) / negative regulation of sodium ion transmembrane transport / negative regulation of potassium ion transmembrane transporter activity / regulation of potassium ion transmembrane transporter activity / negative regulation of potassium ion transmembrane transport / regulation of sodium ion transmembrane transport / negative regulation of sodium ion transmembrane transporter activity / negative regulation of protein localization to cell surface / regulation of membrane repolarization ...positive regulation of caveolin-mediated endocytosis / RING-type E3 ubiquitin transferase (cysteine targeting) / negative regulation of sodium ion transmembrane transport / negative regulation of potassium ion transmembrane transporter activity / regulation of potassium ion transmembrane transporter activity / negative regulation of potassium ion transmembrane transport / regulation of sodium ion transmembrane transport / negative regulation of sodium ion transmembrane transporter activity / negative regulation of protein localization to cell surface / regulation of membrane repolarization / positive regulation of dendrite extension / HECT-type E3 ubiquitin transferase / potassium channel inhibitor activity / ventricular cardiac muscle cell action potential / regulation of monoatomic ion transmembrane transport / sodium channel inhibitor activity / regulation of dendrite morphogenesis / regulation of membrane depolarization / protein monoubiquitination / sodium channel regulator activity / protein K48-linked ubiquitination / potassium channel regulator activity / regulation of membrane potential / multivesicular body / monoatomic ion transmembrane transport / Downregulation of TGF-beta receptor signaling / Downregulation of SMAD2/3:SMAD4 transcriptional activity / regulation of protein stability / Budding and maturation of HIV virion / Stimuli-sensing channels / ubiquitin-protein transferase activity / positive regulation of protein catabolic process / ubiquitin protein ligase activity / Antigen processing: Ubiquitination & Proteasome degradation / ubiquitin-dependent protein catabolic process / proteasome-mediated ubiquitin-dependent protein catabolic process / transmembrane transporter binding / cell differentiation / protein ubiquitination / Golgi apparatus / extracellular exosome / nucleoplasm / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing / molecular dynamics | ||||||
Authors | Alam, S.L. / Alian, A. / Thompson, T. / Rheinemann, L. / Volkman, B.F. / Peterson, F.C. / Sundquist, W.I. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2021 Title: Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release. Authors: Rheinemann, L. / Thompson, T. / Mercenne, G. / Paine, E.L. / Peterson, F.C. / Volkman, B.F. / Alam, S.L. / Alian, A. / Sundquist, W.I. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7lp4.cif.gz | 326.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7lp4.ent.gz | 274.7 KB | Display | PDB format |
PDBx/mmJSON format | 7lp4.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lp/7lp4 ftp://data.pdbj.org/pub/pdb/validation_reports/lp/7lp4 | HTTPS FTP |
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-Related structure data
Related structure data | 7lp1C 7lp2C 7lp3C 7lp5C C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 5606.483 Da / Num. of mol.: 1 / Fragment: WW 3 domain, residues 493-539 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: NEDD4L, KIAA0439, NEDL3 Production host: Escherichia coli 'BL21-Gold(DE3)pLysS AG' (bacteria) References: UniProt: Q96PU5, HECT-type E3 ubiquitin transferase |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 50 mM / Label: apo / pH: 7.5 / Pressure: 1 bar / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement |
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NMR representative | Selection criteria: target function | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |