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- PDB-6yn1: Crystal structure of histone chaperone APLF acidic domain bound t... -

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Basic information

Entry
Database: PDB / ID: 6yn1
TitleCrystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer
Components
  • Aprataxin and PNK-like factor
  • Histone H2A
  • Histone H2B
  • Histone H3
  • Histone H4
KeywordsCHAPERONE / Octamer / aplf / histone
Function / homology
Function and homology information


ADP-D-ribose modification-dependent protein binding / regulation of isotype switching / histone chaperone activity / poly-ADP-D-ribose binding / positive regulation of DNA ligation / regulation of epithelial to mesenchymal transition / single strand break repair / DNA repair-dependent chromatin remodeling / site of DNA damage / protein folding chaperone ...ADP-D-ribose modification-dependent protein binding / regulation of isotype switching / histone chaperone activity / poly-ADP-D-ribose binding / positive regulation of DNA ligation / regulation of epithelial to mesenchymal transition / single strand break repair / DNA repair-dependent chromatin remodeling / site of DNA damage / protein folding chaperone / DNA-(apurinic or apyrimidinic site) endonuclease activity / protein localization to chromatin / 3'-5' exonuclease activity / embryo implantation / DNA endonuclease activity / double-strand break repair via nonhomologous end joining / structural constituent of chromatin / double-strand break repair / nucleosome / nucleosome assembly / site of double-strand break / histone binding / Hydrolases; Acting on ester bonds / protein heterodimerization activity / nucleotide binding / DNA repair / DNA damage response / DNA binding / nucleoplasm / metal ion binding / nucleus / cytosol
Similarity search - Function
Aprataxin and PNK-like factor, PBZ domain / Aprataxin and PNK-like factor / PBZ domain / PNK, FHA domain / FHA domain / SMAD/FHA domain superfamily / Histone H2B signature. / Histone H2B / Histone H2B / Histone H2A conserved site ...Aprataxin and PNK-like factor, PBZ domain / Aprataxin and PNK-like factor / PBZ domain / PNK, FHA domain / FHA domain / SMAD/FHA domain superfamily / Histone H2B signature. / Histone H2B / Histone H2B / Histone H2A conserved site / Histone H2A signature. / Histone H2A, C-terminal domain / C-terminus of histone H2A / Histone H2A / Histone 2A / Histone H4, conserved site / Histone H4 signature. / Histone H4 / Histone H4 / CENP-T/Histone H4, histone fold / Centromere kinetochore component CENP-T histone fold / TATA box binding protein associated factor / TATA box binding protein associated factor (TAF), histone-like fold domain / Histone H3 signature 1. / Histone H3 signature 2. / Histone H3 / Histone H3/CENP-A / Histone H2A/H2B/H3 / Core histone H2A/H2B/H3/H4 / Histone-fold
Similarity search - Domain/homology
Histone H2B / Histone H3 / Histone H4 / Histone H2A / Aprataxin and PNK-like factor
Similarity search - Component
Biological speciesXenopus laevis (African clawed frog)
Homo sapiens (human)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.35 Å
AuthorsCorbeski, I. / Guo, X. / Van Ingen, H. / Sixma, T.K.
CitationJournal: Sci Adv / Year: 2022
Title: Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF.
Authors: Corbeski, I. / Guo, X. / Eckhardt, B.V. / Fasci, D. / Wiegant, W. / Graewert, M.A. / Vreeken, K. / Wienk, H. / Svergun, D.I. / Heck, A.J.R. / van Attikum, H. / Boelens, R. / Sixma, T.K. / ...Authors: Corbeski, I. / Guo, X. / Eckhardt, B.V. / Fasci, D. / Wiegant, W. / Graewert, M.A. / Vreeken, K. / Wienk, H. / Svergun, D.I. / Heck, A.J.R. / van Attikum, H. / Boelens, R. / Sixma, T.K. / Mattiroli, F. / van Ingen, H.
History
DepositionApr 10, 2020Deposition site: PDBE / Processing site: PDBE
Revision 1.0Nov 17, 2021Provider: repository / Type: Initial release
Revision 1.1Oct 25, 2023Group: Data collection / Database references
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / citation / citation_author
Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year
Revision 1.2Jan 24, 2024Group: Refinement description / Category: pdbx_initial_refinement_model

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Histone H2A
B: Histone H2B
C: Histone H3
D: Histone H4
E: Aprataxin and PNK-like factor
F: Histone H2A
G: Histone H2B
H: Histone H3
I: Histone H4
J: Aprataxin and PNK-like factor
K: Histone H2A
L: Histone H2B
M: Histone H3
N: Histone H4
O: Aprataxin and PNK-like factor
P: Histone H2A
Q: Histone H2B
R: Histone H3
S: Histone H4
T: Aprataxin and PNK-like factor
U: Histone H2A
V: Histone H2B
W: Histone H3
X: Histone H4
Y: Aprataxin and PNK-like factor
Z: Histone H2A
a: Histone H2B
b: Histone H3
c: Histone H4
d: Aprataxin and PNK-like factor
e: Histone H2A
f: Histone H2B
g: Histone H3
h: Histone H4
i: Aprataxin and PNK-like factor
j: Histone H2A
k: Histone H2B
l: Histone H3
m: Histone H4
n: Aprataxin and PNK-like factor
hetero molecules


Theoretical massNumber of molelcules
Total (without water)395,21055
Polymers393,88540
Non-polymers1,32515
Water7,476415
1
A: Histone H2A
B: Histone H2B
C: Histone H3
D: Histone H4
E: Aprataxin and PNK-like factor
F: Histone H2A
G: Histone H2B
H: Histone H3
I: Histone H4
J: Aprataxin and PNK-like factor
hetero molecules


Theoretical massNumber of molelcules
Total (without water)98,78314
Polymers98,47110
Non-polymers3124
Water18010
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
K: Histone H2A
L: Histone H2B
M: Histone H3
N: Histone H4
O: Aprataxin and PNK-like factor
P: Histone H2A
Q: Histone H2B
R: Histone H3
S: Histone H4
T: Aprataxin and PNK-like factor
hetero molecules


Theoretical massNumber of molelcules
Total (without water)98,84014
Polymers98,47110
Non-polymers3684
Water1629
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
3
U: Histone H2A
V: Histone H2B
W: Histone H3
X: Histone H4
Y: Aprataxin and PNK-like factor
Z: Histone H2A
a: Histone H2B
b: Histone H3
c: Histone H4
d: Aprataxin and PNK-like factor
hetero molecules


Theoretical massNumber of molelcules
Total (without water)98,74813
Polymers98,47110
Non-polymers2763
Water18010
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
4
e: Histone H2A
f: Histone H2B
g: Histone H3
h: Histone H4
i: Aprataxin and PNK-like factor
j: Histone H2A
k: Histone H2B
l: Histone H3
m: Histone H4
n: Aprataxin and PNK-like factor
hetero molecules


Theoretical massNumber of molelcules
Total (without water)98,84014
Polymers98,47110
Non-polymers3684
Water1629
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)105.224, 189.686, 204.324
Angle α, β, γ (deg.)90.000, 90.000, 90.000
Int Tables number19
Space group name H-MP212121
Space group name HallP2ac2ab
Symmetry operation#1: x,y,z
#2: x+1/2,-y+1/2,-z
#3: -x,y+1/2,-z+1/2
#4: -x+1/2,-y,z+1/2

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Components

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Protein , 4 types, 32 molecules AFKPUZejBGLQVafkCHMRWbglDINSXchm

#1: Protein
Histone H2A /


Mass: 11754.768 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Xenopus laevis (African clawed frog) / Gene: hist1h2aj, h2ac14, LOC494591, XELAEV_18003602mg / Production host: Escherichia coli (E. coli) / References: UniProt: Q6AZJ8
#2: Protein
Histone H2B /


Mass: 11311.154 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Xenopus laevis (African clawed frog) / Gene: XELAEV_18032685mg / Production host: Escherichia coli (E. coli) / References: UniProt: A0A1L8FQA5
#3: Protein
Histone H3 /


Mass: 11633.632 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Xenopus laevis (African clawed frog) / Gene: XELAEV_18002543mg / Production host: Escherichia coli (E. coli) / References: UniProt: A0A310TTQ1
#4: Protein
Histone H4 /


Mass: 9540.251 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Xenopus laevis (African clawed frog) / Production host: Escherichia coli (E. coli) / References: UniProt: P62799

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Protein/peptide , 1 types, 8 molecules EJOTYdin

#5: Protein/peptide
Aprataxin and PNK-like factor / Apurinic-apyrimidinic endonuclease APLF / PNK and APTX-like FHA domain-containing protein / XRCC1- ...Apurinic-apyrimidinic endonuclease APLF / PNK and APTX-like FHA domain-containing protein / XRCC1-interacting protein 1


Mass: 4995.819 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: APLF, C2orf13, PALF, XIP1 / Production host: Escherichia coli (E. coli)
References: UniProt: Q8IW19, DNA-(apurinic or apyrimidinic site) lyase

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Non-polymers , 3 types, 430 molecules

#6: Chemical
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / Glycerol


Mass: 92.094 Da / Num. of mol.: 14 / Source method: obtained synthetically / Formula: C3H8O3
#7: Chemical ChemComp-CL / CHLORIDE ION / Chloride


Mass: 35.453 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: Cl
#8: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 415 / Source method: isolated from a natural source / Formula: H2O

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Details

Has ligand of interestN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.58 Å3/Da / Density % sol: 52.41 % / Description: 150um x 150um x 150um
Crystal growTemperature: 277 K / Method: vapor diffusion, sitting drop
Details: 0.1 M sodium cacodylate pH6.5, 1.0 M tri-sodium citrate

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: NSLS / Beamline: X6A / Wavelength: 1 Å
DetectorType: DECTRIS PILATUS 2M-F / Detector: PIXEL / Date: Mar 16, 2020
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
ReflectionResolution: 2.2→20 Å / Num. obs: 206799 / % possible obs: 99.8 % / Redundancy: 6.6 % / Biso Wilson estimate: 49 Å2 / CC1/2: 0.99 / Rmerge(I) obs: 0.139 / Rpim(I) all: 0.058 / Rrim(I) all: 0.151 / Net I/σ(I): 11.1
Reflection shellResolution: 2.2→2.33 Å / Rmerge(I) obs: 3.2 / Mean I/σ(I) obs: 0.54 / Num. unique obs: 23719 / CC1/2: 0.17 / Rrim(I) all: 3.4

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Processing

Software
NameVersionClassification
PHENIX1.17.1_3660refinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 2HIO
Resolution: 2.35→19.99 Å / SU ML: 0.3289 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 25.6704
Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
RfactorNum. reflection% reflection
Rfree0.2325 8284 4.88 %
Rwork0.1769 161494 -
obs0.1796 169778 99.96 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso mean: 62.33 Å2
Refinement stepCycle: LAST / Resolution: 2.35→19.99 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms24456 0 85 415 24956
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.008824902
X-RAY DIFFRACTIONf_angle_d0.953733515
X-RAY DIFFRACTIONf_chiral_restr0.05483838
X-RAY DIFFRACTIONf_plane_restr0.00494281
X-RAY DIFFRACTIONf_dihedral_angle_d19.00349568
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.35-2.380.3632670.31365304X-RAY DIFFRACTION99.96
2.38-2.40.34152710.30035364X-RAY DIFFRACTION100
2.4-2.430.35612730.29465310X-RAY DIFFRACTION100
2.43-2.460.34422610.2815400X-RAY DIFFRACTION99.98
2.46-2.50.31592640.26365315X-RAY DIFFRACTION99.96
2.5-2.530.31692820.26185324X-RAY DIFFRACTION99.98
2.53-2.570.2962500.26115362X-RAY DIFFRACTION100
2.57-2.610.33292810.25215321X-RAY DIFFRACTION99.96
2.61-2.650.32072820.24385353X-RAY DIFFRACTION99.98
2.65-2.690.27142420.2375379X-RAY DIFFRACTION99.98
2.69-2.740.30182940.23655297X-RAY DIFFRACTION99.96
2.74-2.790.29672870.22735337X-RAY DIFFRACTION99.98
2.79-2.840.28212790.20955384X-RAY DIFFRACTION99.98
2.84-2.90.23822570.19885328X-RAY DIFFRACTION100
2.9-2.960.25632870.20215353X-RAY DIFFRACTION99.96
2.96-3.030.28712690.20795360X-RAY DIFFRACTION99.98
3.03-3.10.24972730.19685412X-RAY DIFFRACTION100
3.1-3.190.24092620.19435365X-RAY DIFFRACTION100
3.19-3.280.2772880.19795348X-RAY DIFFRACTION99.98
3.28-3.390.28362840.19065386X-RAY DIFFRACTION100
3.39-3.510.2443040.17195356X-RAY DIFFRACTION100
3.51-3.650.21232910.16175351X-RAY DIFFRACTION99.96
3.65-3.810.22332710.15385392X-RAY DIFFRACTION99.96
3.81-4.010.21472980.14965386X-RAY DIFFRACTION100
4.01-4.260.20612890.14475429X-RAY DIFFRACTION99.97
4.26-4.580.17862760.12765441X-RAY DIFFRACTION99.98
4.58-5.040.18472810.12665438X-RAY DIFFRACTION99.98
5.04-5.750.19372720.15655473X-RAY DIFFRACTION100
5.75-7.190.22772900.17395512X-RAY DIFFRACTION99.97
7.19-19.990.16922590.14755714X-RAY DIFFRACTION99.4
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.02985953364-1.22673265195-2.1412115165.65587193075.611861575587.55048646903-0.09984942080130.276955840249-0.908665362266-0.0634097537322-0.600924463146-0.5551943671150.5293442653630.3356999305710.568809123910.7459976405210.2017017494460.1765986629770.4723223070810.02787594276740.72056799059868.0506834667-30.107844189855.6632519405
24.2321183207-1.12476402036-4.167387877462.028100147871.054328555314.19680028136-0.175825987249-0.493388066547-0.653452976613-0.167072299036-0.0102735075995-1.109092869150.4615898175791.053387421470.3234850597380.6323911387230.1653248420750.03220197436860.511757434356-0.01175893530210.58347021660664.0916216099-34.919310843467.2571204215
37.98942925091-0.757591393224-1.742961244315.069404396035.079068877195.163955244050.467265040528-0.77869034122-1.316705730380.118952466562-0.72147273406-0.7409587185431.135718659740.06950502548920.1819877342440.8425186755680.08042919133980.01580250773830.5959144094620.148676829110.61790667954456.424583315-41.047639241468.8624512582
42.418708800171.79865161113-0.3606625368392.164638223930.114518412532.84327690695-0.03828543537050.1077150247920.0198521733988-0.60406165221-0.0242011627187-0.2392576381470.120847072330.2192197883680.001493878658740.5492162578380.07728573607740.06428579196560.383375878556-0.00688178984930.29799868441159.2017743985-18.084359825157.2290934163
56.46081712108-3.196407920822.700820782447.326385850061.211624235154.45867840475-0.106611416851-0.06769765343020.651776438588-0.02629545847190.0118628108565-0.0245642782484-0.0809906800532-0.06738918159120.1353967194810.426848954850.03905445473230.0247962253170.3308057628750.04828368978620.37048278016259.0428066817-4.8606417639763.1425895449
63.040010269161.39527155221-2.934411140042.2003548478-0.8323505846262.981655762240.370131548511.990107635150.528375732374-0.875732691798-0.1132951018850.912208029772-0.561436822884-0.448008065447-0.323800301190.5303625064220.0987541112578-0.0572007682360.496332148430.0673587978450.49043976170346.8988791628-14.463170749860.5618638675
75.905232371972.804413242415.767237746362.295043488842.640073264535.690384692860.681262954878-0.3489515733630.3599940510030.589368421354-0.9453686542081.290671928851.08847651837-0.1026539398310.4752325740330.60200066530.09494064984120.02820827579890.552762941505-0.03286151864290.60766638143849.1124117222-15.187135069170.3669642655
87.1266482573-4.125235938091.569473465374.25318354972-3.129076440593.081575671970.2681946618080.219372839567-0.57144345710.140283236798-0.2799412852610.426123314467-0.1227840180330.1714261245350.1542739447390.4784536776350.02033594791350.04317008257520.445718199139-0.02731171518040.46187850620851.2871391514-2.3091069621968.6819170357
97.169257470845.25095328547-5.045442171643.82948853538-3.728430007844.69357989016-0.246849105429-0.446640580064-0.192023039304-0.8419332908150.41286550181.883410212510.171522453097-0.646311702265-0.2539001544260.6147997052170.124442018908-0.09478166813650.462879615870.00395105008450.63032524580337.2431215579.543249107964.8346086372
105.85060902885-1.633654618993.376223317059.493652670690.2064824764792.151345413490.1164025749520.19285751334-0.0261820087865-0.602085173128-0.267133365196-0.369817466980.3073757031890.7125725162010.1703796218440.5119599202490.08152254938550.1870943985850.49166138478-0.04232590240990.45979429008868.2739378517-15.882403817260.1831989142
117.427071167227.532239806231.201927282757.903001144790.7082529090610.794254085490.292635851597-0.841833423861-0.4538448321720.274424691288-0.49307624928-0.2385458438090.3081542421570.1410932463120.1850545167180.481736200260.1315095531190.0639948621160.4454245177620.002092107429590.4334341364154.4053357298-26.098837243968.1264939089
122.30599694454-1.28810920981-1.205956376530.8391644247650.6939453776431.073477497760.7732480591090.709334123512-0.944668140542-0.0929381849942-0.5943413561680.2057889032660.36050776532-0.287159805353-0.1004980937020.7204223023830.0507625060666-0.001530475942280.499635233952-0.03365055597890.76594643368549.6463705085-43.799063884463.8759040462
137.91952061425-4.93659709538-4.611795810677.629967384624.613363171325.676673321020.3345490685670.4256036469090.15313029055-0.615576181162-0.4088368987290.0523872188799-0.139425172517-0.01859297374650.06143810354460.587746435110.0466301575184-0.08468255502420.464865522289-0.0144025434180.32454940752153.1012415927-29.969849685753.7431160511
144.74527917433-5.48638223638-6.18547027625.894689232226.583253119258.560437447010.5070182196340.928696349327-0.277405276202-0.910919573553-0.5728863635880.494686238677-0.340327004602-0.598021783256-0.01046087723720.370634784269-0.0381457249674-0.01489510263020.606228954140.02183215084630.4971065712756.55575025514-14.116642100376.8592219946
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1547.137836229881.13107906572-0.7984358741776.734414739362.319503715382.593199857770.184783395291-0.1604230780180.359798364626-0.2552069567190.0209220694796-0.617642471893-1.157716079860.413175068319-0.1660135866130.376570307135-0.02381047906130.02983455576980.332201877940.03491215884570.35107836705410.809216605611.911371936618.8054099068
1559.620182283766.085476724122.221978555946.680490452711.062242725562.45052583589-0.1363996869250.630010798012-0.420995018788-0.3742504223180.270431297284-0.177412977432-0.0221243141971-0.223950836203-0.08614037018130.340222435473-0.02102902271910.02141444246430.5053996832-0.02792137689520.2406259980632.27235330121-3.735179819198.99437025551
1566.461607674792.183521885955.559071902089.101171608043.765077581585.694139390660.1046017325180.699309757883-1.02543069795-0.2373847028320.1426618602670.7664345387760.358264669631-0.44210795586-0.181210805460.418756722064-0.112671531718-0.01215479926580.812383756296-0.003413950709730.483820133827-10.507694106-9.5543092807512.7255408169
1575.65379506918-5.621668395-1.550460025615.687993510831.451828742441.934516959570.6030254029741.01547832228-0.643811355347-0.0226916070354-1.120104214330.3434550277130.113661621068-0.2968767596310.595014924520.3599206521350.00122445302332-0.04508690392340.601130895987-0.004778328838970.439163589098-5.77810868532-4.9504556587822.6450787209
1584.815512931074.714305505875.507724337194.655318205125.421304894566.30135653774-1.13308096395-1.299194180081.82926519121-0.3230851717790.07737840185661.67735301967-1.81675425298-2.12012787730.6898877056420.7399468707810.250429206859-0.04643390216830.9691629150110.0422760849890.920499133845-9.7963515638413.144578432210.1446372939
1594.97967895142.264513511232.472505012479.867533546336.219899047684.12212739706-0.09505071169291.121025777360.765792369836-0.5238455486560.2944365485781.86031318381-0.00460343067353-1.49831351436-0.2226157722580.4269267857130.0328021443156-0.1253619593270.7974200411440.1928442716580.785987213197-16.6340612113.60929572065.74296452229
1603.598276361154.10287983482-5.060437641944.69096613528-5.717608393147.088939103541.09102939036-0.2737220141274.507182035511.029219619641.264368907274.04554259023-0.892258305373-1.4583069538-2.388534768830.6397343710040.0219575718570.1259646021170.8492864429330.02905086623781.27684562352-21.607702036.6555482849830.7078255787
1619.827390125350.185594695465-5.637712245746.50644264619-0.5991112878983.43013405204-0.1841308897460.281338667084-1.015512863680.840625699828-0.201747524971.32288529690.222723090839-1.757816012070.1715979692650.725023746957-0.1525789219160.2077248594331.09341253163-0.05163733539660.770830252012-25.0753935427-14.14681343143.2325000117
1627.83867244106-7.07294406945-7.288871990537.777485937526.184317608678.529094137190.4815039729320.0341029930887-0.548118359071-0.336151497515-0.9686442992620.9581190967970.0130868351798-1.025630063750.5845376745120.514448614443-0.219224871472-0.07385640522470.946001953551-0.03172250121840.767087836335-22.1590077841-19.030944128731.2739565401
1632.20147153474-2.8863359169-1.535533788684.195027457692.869778183043.358225135530.5691913030440.191633764819-1.40765526115-0.975461416765-1.551865971951.264893059270.58756953714-0.2605144707940.8096320596650.739887939022-0.200653307806-0.07881491352070.601579059342-0.05714643770960.733297202119-17.4645987346-28.162208533629.5340533847
1646.343859367665.170053628180.3694570009363.987028807450.0340891882250.9298081019380.3746849511040.1260403555950.05680920548520.951092369-0.3440542015150.2845634783770.178264995889-0.4719245685320.004836276112370.426942357446-0.0965937486650.04082548138120.7313632076050.01534829826620.350657460728-11.7603536895-6.2152688532441.2491285397
1653.78109706987-1.63735123298-3.727515533032.089937774821.81458982783.974128639920.462191794478-0.2689810844750.933661449807-1.15637662688-0.8293732355320.0340731184416-1.01769234686-0.6740468386860.5975250238010.6045949480530.1024724508850.007386422450320.703945075892-0.0617103844790.717180622324-11.149815339412.346299263536.8256295832
1664.87375304923-1.059075793993.135815434657.11570674932-3.138008789063.303600057160.08106667812410.459478547917-0.195865898648-0.09504705152580.1057633860460.301136658736-0.097076610193-0.342513833375-0.2592697519330.354537500728-0.02659858384040.02051411168720.653948153820.05502035910570.398927827762-3.68545638493.7462156096533.7110789322
1678.785403125046.533343633054.718421442225.619128623144.535702721464.079663257120.853181638441-0.691329238927-0.9641676303130.554387637834-0.240534705148-1.94128679672-0.00796571912572-0.0345208850852-0.4702267844910.549086856386-0.0707614817157-0.01311208789180.6301788440330.02940077758360.5790277987521.19670154943-5.4458377431638.4462340731
1684.51422051214.371540525412.168799880017.1075611519-0.6452951882352.81970730701-0.1118526355530.336045733929-0.495346712561-0.5103767190420.47467416742-0.71924069284-0.05708746768690.139496045932-0.3965831108450.493977882182-0.05283626763150.03841620636360.5762742938-0.01466112490260.4376938773360.9145442440031.7425560217628.9772094348
1699.237339344213.127873470130.2938542475872.149099679112.767729739886.428109208251.40054740948-0.209833326319-0.5056275772930.7895182949390.215327235037-1.27194649881-0.1819659008480.266811627092-0.4153963973610.805474841841-0.219368883774-0.0136283652150.483185401412-0.06601222579660.63847744210818.416040228711.382897070632.5827538369
1702.209250079330.6197630786122.309192458642.349198802893.280771619987.263805609790.058766188377-0.791877856602-0.1737641277040.8329798029840.02995012832680.8311087514490.206347242801-0.3210551417450.0225166410130.4955617708730.01009810112260.08148873266060.857000448670.07935031171280.487554539852-19.15189612340.4253751573739.047716257
1711.49829973575-2.456584832550.7729715515123.2243763849-1.704073111612.362925195990.1711105174190.369252979232-0.290287059962-0.574333502378-0.3206902763010.3714514402050.293377811171-0.4749519289550.1302312317470.387672736148-0.1310840476390.01286914092790.653476840095-0.04733582832190.490285605395-10.3208951115-14.182364903930.3887123717
1724.952882933080.343719190356-1.679540067553.66958059297-0.3156950213322.26810770483-0.0754801252004-0.161087758132-0.5021365320710.67216314757-0.05989894181410.1434954683570.23372644022-0.3691590700270.1427008766820.533765838262-0.159262681069-0.0320103388470.7223478842060.08389003107270.417490801831-10.3122777609-21.597129662942.7368854167
1735.928839242984.82781768013-6.119803850674.06734531265-4.963120030086.383970923950.257140779283-1.04126574151-0.4928460128160.129322370437-0.018402835025-0.581980536016-0.2742473895410.757103773096-0.3207514155420.4459031522350.0834388553787-0.04055664191990.648399524509-0.1395239619650.59632821969138.8762614412-22.040437057321.1320670127
1744.808766745440.680229717875-0.5780121207512.34188162746-3.910216255886.85679984828-0.374962450999-0.279211079947-0.14284138140.378583317276-0.0323625891255-0.1713505650310.5767230524480.2926018471370.218783785910.527225578072-0.0188566989045-0.1433749505320.5037747352380.003606275588580.39987180793720.7011352391-29.684039865938.9761709238
1753.864411370523.46444998673-1.363353252486.58402910229-2.768367620652.47602740936-0.05079049630950.118931657746-0.0698540263291-0.2941694086650.2254839091460.1898742986110.441822625968-0.0559847305484-0.2531710788810.319281189582-0.0107693581908-0.06647171743650.485376356973-0.02631503553220.4248618353117.8339025769-23.591177828431.7583168159
1766.52027282195-3.2709066966-2.16129984438.609242120531.560802639542.28555455252-0.0340395095304-0.422619809440.9107501753190.2820415880330.3355895561630.207619739251-0.06639538254920.193901576294-0.3553685132410.413203231379-0.0861298964583-0.02955180741360.4704146048780.009603765069410.36659149350723.0834431333-7.2091923031328.4215046399
1773.03068513828-1.443519469022.829137119963.31068695029-2.807304748923.711576679170.2345799880340.04537772503150.01462448497720.541710310386-0.498957000764-0.660454974540.8026675307710.9729475275340.1854115131990.49099337123-0.0176103651588-0.1165664260170.4414684334910.0237755545580.47675614977230.0307123153-22.546223151132.3584963259
1786.73676213393-6.93507786654-6.040269320917.623215850756.190636215185.40730267063-0.262964952404-0.2168405653720.713902193582-0.1245466983780.08210291731950.137770841593-0.4411693601221.16464991149-0.0713293044430.470649961473-0.0556315621794-0.0761195494060.621255949504-0.0005851194066510.54768709032333.3696668454-14.105183719426.0390919314
1793.779074015283.17464534121-1.731874946346.05112420047-1.952906655341.437686244250.378882479568-0.9424926006280.1585920803630.641506652872-0.252756600630.3011311395440.1529529187420.0528134807457-0.1103428150860.53159458606-0.0875403152266-0.05501942065280.5566856363720.01334769250760.31542281317411.9080027368-23.753910772939.1266346141
1803.28624863191-2.443710288950.2721110730186.00556379846-5.126661894965.355463722470.2009635392520.4613211143420.203574232520.2265678918230.2062035927591.129134926280.282402202148-0.697666056172-0.3513493725730.491104176155-0.11891375815-0.05980772189230.700081129510.05268254594770.5038077073954.84266366694-27.637911247631.2907536908
1816.66258922237-2.26060022614-0.5936229034368.404486352447.34150787546.91960513305-0.0689729763437-0.189035514018-0.2705086744840.925847259755-0.158472747468-0.3010746931650.516164483136-0.9635558799130.1733012387440.602025788072-0.0481065766574-0.09729178542060.653480220240.0745653832670.4009869123719.46563349067-28.625878145925.1107692554
1825.92674683695-5.03820540008-7.232254716184.378993587656.154146615948.803875212750.215423889651-0.329491578175-1.80776750589-0.4115325925590.0435679009401-0.1753876866711.772050473041.01015316341-0.4073888453340.9141985593730.0446654140712-0.1768657292590.6282002600270.1575977005571.0556163307927.1987908074-38.750330788736.8305863303
1836.65869056042-1.32285869843-3.337551658417.531787887044.824324106163.992892135750.503662590535-0.993792747187-0.8690198311220.6696406850410.14974050615-0.03330789165820.86254762659-0.648331043955-0.5934909400880.676885654392-0.16337358412-0.1509217720260.6403711651060.1721115568090.7273632822516.5888348559-40.390000238141.3310282698
1842.948236598392.48973104613-1.869840516742.15798357029-1.770807455162.889723514440.3533368028412.37923385558-5.90748767457-1.927402805430.681575396524-0.3766583135990.2987243819310.91393509626-0.9997477907251.41689124013-0.0628571612594-0.2680719859170.731252641032-0.2777883562141.6288052128413.189677649-48.133683780615.9304491154
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 16 through 26 )
2X-RAY DIFFRACTION2chain 'A' and (resid 27 through 36 )
3X-RAY DIFFRACTION3chain 'A' and (resid 37 through 44 )
4X-RAY DIFFRACTION4chain 'A' and (resid 45 through 73 )
5X-RAY DIFFRACTION5chain 'A' and (resid 74 through 89 )
6X-RAY DIFFRACTION6chain 'A' and (resid 90 through 96 )
7X-RAY DIFFRACTION7chain 'A' and (resid 97 through 101 )
8X-RAY DIFFRACTION8chain 'A' and (resid 102 through 111 )
9X-RAY DIFFRACTION9chain 'A' and (resid 112 through 118 )
10X-RAY DIFFRACTION10chain 'B' and (resid 35 through 55 )
11X-RAY DIFFRACTION11chain 'B' and (resid 56 through 83 )
12X-RAY DIFFRACTION12chain 'B' and (resid 84 through 90 )
13X-RAY DIFFRACTION13chain 'B' and (resid 91 through 124 )
14X-RAY DIFFRACTION14chain 'C' and (resid 40 through 56 )
15X-RAY DIFFRACTION15chain 'C' and (resid 57 through 78 )
16X-RAY DIFFRACTION16chain 'C' and (resid 79 through 113 )
17X-RAY DIFFRACTION17chain 'C' and (resid 114 through 133 )
18X-RAY DIFFRACTION18chain 'D' and (resid 26 through 47 )
19X-RAY DIFFRACTION19chain 'D' and (resid 48 through 82 )
20X-RAY DIFFRACTION20chain 'D' and (resid 83 through 101 )
21X-RAY DIFFRACTION21chain 'E' and (resid 459 through 463 )
22X-RAY DIFFRACTION22chain 'E' and (resid 464 through 473 )
23X-RAY DIFFRACTION23chain 'E' and (resid 474 through 487 )
24X-RAY DIFFRACTION24chain 'F' and (resid 16 through 35 )
25X-RAY DIFFRACTION25chain 'F' and (resid 36 through 44 )
26X-RAY DIFFRACTION26chain 'F' and (resid 45 through 73 )
27X-RAY DIFFRACTION27chain 'F' and (resid 74 through 96 )
28X-RAY DIFFRACTION28chain 'F' and (resid 97 through 111 )
29X-RAY DIFFRACTION29chain 'F' and (resid 112 through 118 )
30X-RAY DIFFRACTION30chain 'G' and (resid 36 through 83 )
31X-RAY DIFFRACTION31chain 'G' and (resid 84 through 123 )
32X-RAY DIFFRACTION32chain 'H' and (resid 40 through 56 )
33X-RAY DIFFRACTION33chain 'H' and (resid 57 through 78 )
34X-RAY DIFFRACTION34chain 'H' and (resid 79 through 113 )
35X-RAY DIFFRACTION35chain 'H' and (resid 114 through 133 )
36X-RAY DIFFRACTION36chain 'I' and (resid 26 through 30 )
37X-RAY DIFFRACTION37chain 'I' and (resid 31 through 47 )
38X-RAY DIFFRACTION38chain 'I' and (resid 48 through 82 )
39X-RAY DIFFRACTION39chain 'I' and (resid 83 through 93 )
40X-RAY DIFFRACTION40chain 'I' and (resid 94 through 101 )
41X-RAY DIFFRACTION41chain 'J' and (resid 459 through 468 )
42X-RAY DIFFRACTION42chain 'J' and (resid 469 through 478 )
43X-RAY DIFFRACTION43chain 'J' and (resid 479 through 487 )
44X-RAY DIFFRACTION44chain 'K' and (resid 16 through 36 )
45X-RAY DIFFRACTION45chain 'K' and (resid 37 through 44 )
46X-RAY DIFFRACTION46chain 'K' and (resid 45 through 72 )
47X-RAY DIFFRACTION47chain 'K' and (resid 73 through 89 )
48X-RAY DIFFRACTION48chain 'K' and (resid 90 through 96 )
49X-RAY DIFFRACTION49chain 'K' and (resid 97 through 111 )
50X-RAY DIFFRACTION50chain 'K' and (resid 112 through 118 )
51X-RAY DIFFRACTION51chain 'L' and (resid 36 through 55 )
52X-RAY DIFFRACTION52chain 'L' and (resid 56 through 83 )
53X-RAY DIFFRACTION53chain 'L' and (resid 84 through 123 )
54X-RAY DIFFRACTION54chain 'M' and (resid 39 through 56 )
55X-RAY DIFFRACTION55chain 'M' and (resid 57 through 78 )
56X-RAY DIFFRACTION56chain 'M' and (resid 79 through 113 )
57X-RAY DIFFRACTION57chain 'M' and (resid 114 through 133 )
58X-RAY DIFFRACTION58chain 'N' and (resid 26 through 30 )
59X-RAY DIFFRACTION59chain 'N' and (resid 31 through 40 )
60X-RAY DIFFRACTION60chain 'N' and (resid 41 through 47 )
61X-RAY DIFFRACTION61chain 'N' and (resid 48 through 82 )
62X-RAY DIFFRACTION62chain 'N' and (resid 83 through 93 )
63X-RAY DIFFRACTION63chain 'N' and (resid 94 through 100 )
64X-RAY DIFFRACTION64chain 'O' and (resid 459 through 463 )
65X-RAY DIFFRACTION65chain 'O' and (resid 464 through 473 )
66X-RAY DIFFRACTION66chain 'O' and (resid 482 through 487 )
67X-RAY DIFFRACTION67chain 'P' and (resid 15 through 26 )
68X-RAY DIFFRACTION68chain 'P' and (resid 27 through 44 )
69X-RAY DIFFRACTION69chain 'P' and (resid 45 through 72 )
70X-RAY DIFFRACTION70chain 'P' and (resid 73 through 79 )
71X-RAY DIFFRACTION71chain 'P' and (resid 80 through 89 )
72X-RAY DIFFRACTION72chain 'P' and (resid 90 through 96 )
73X-RAY DIFFRACTION73chain 'P' and (resid 97 through 111 )
74X-RAY DIFFRACTION74chain 'P' and (resid 112 through 118 )
75X-RAY DIFFRACTION75chain 'Q' and (resid 36 through 55 )
76X-RAY DIFFRACTION76chain 'Q' and (resid 56 through 83 )
77X-RAY DIFFRACTION77chain 'Q' and (resid 84 through 90 )
78X-RAY DIFFRACTION78chain 'Q' and (resid 91 through 123 )
79X-RAY DIFFRACTION79chain 'R' and (resid 40 through 56 )
80X-RAY DIFFRACTION80chain 'R' and (resid 57 through 78 )
81X-RAY DIFFRACTION81chain 'R' and (resid 79 through 113 )
82X-RAY DIFFRACTION82chain 'R' and (resid 114 through 133 )
83X-RAY DIFFRACTION83chain 'S' and (resid 25 through 30 )
84X-RAY DIFFRACTION84chain 'S' and (resid 31 through 40 )
85X-RAY DIFFRACTION85chain 'S' and (resid 41 through 47 )
86X-RAY DIFFRACTION86chain 'S' and (resid 48 through 75 )
87X-RAY DIFFRACTION87chain 'S' and (resid 76 through 93 )
88X-RAY DIFFRACTION88chain 'S' and (resid 94 through 101 )
89X-RAY DIFFRACTION89chain 'T' and (resid 459 through 463 )
90X-RAY DIFFRACTION90chain 'T' and (resid 464 through 473 )
91X-RAY DIFFRACTION91chain 'T' and (resid 481 through 487 )
92X-RAY DIFFRACTION92chain 'U' and (resid 15 through 36 )
93X-RAY DIFFRACTION93chain 'U' and (resid 37 through 44 )
94X-RAY DIFFRACTION94chain 'U' and (resid 45 through 72 )
95X-RAY DIFFRACTION95chain 'U' and (resid 73 through 79 )
96X-RAY DIFFRACTION96chain 'U' and (resid 80 through 89 )
97X-RAY DIFFRACTION97chain 'U' and (resid 90 through 96 )
98X-RAY DIFFRACTION98chain 'U' and (resid 97 through 117 )
99X-RAY DIFFRACTION99chain 'V' and (resid 35 through 48 )
100X-RAY DIFFRACTION100chain 'V' and (resid 49 through 55 )
101X-RAY DIFFRACTION101chain 'V' and (resid 56 through 83 )
102X-RAY DIFFRACTION102chain 'V' and (resid 84 through 103 )
103X-RAY DIFFRACTION103chain 'V' and (resid 104 through 123 )
104X-RAY DIFFRACTION104chain 'W' and (resid 40 through 55 )
105X-RAY DIFFRACTION105chain 'W' and (resid 56 through 78 )
106X-RAY DIFFRACTION106chain 'W' and (resid 79 through 113 )
107X-RAY DIFFRACTION107chain 'W' and (resid 114 through 133 )
108X-RAY DIFFRACTION108chain 'X' and (resid 24 through 30 )
109X-RAY DIFFRACTION109chain 'X' and (resid 31 through 47 )
110X-RAY DIFFRACTION110chain 'X' and (resid 48 through 82 )
111X-RAY DIFFRACTION111chain 'X' and (resid 83 through 100 )
112X-RAY DIFFRACTION112chain 'Y' and (resid 459 through 463 )
113X-RAY DIFFRACTION113chain 'Y' and (resid 464 through 468 )
114X-RAY DIFFRACTION114chain 'Y' and (resid 469 through 473 )
115X-RAY DIFFRACTION115chain 'Y' and (resid 474 through 487 )
116X-RAY DIFFRACTION116chain 'Z' and (resid 15 through 26 )
117X-RAY DIFFRACTION117chain 'Z' and (resid 27 through 44 )
118X-RAY DIFFRACTION118chain 'Z' and (resid 45 through 72 )
119X-RAY DIFFRACTION119chain 'Z' and (resid 73 through 88 )
120X-RAY DIFFRACTION120chain 'Z' and (resid 89 through 101 )
121X-RAY DIFFRACTION121chain 'Z' and (resid 102 through 117 )
122X-RAY DIFFRACTION122chain 'a' and (resid 35 through 55 )
123X-RAY DIFFRACTION123chain 'a' and (resid 56 through 83 )
124X-RAY DIFFRACTION124chain 'a' and (resid 84 through 90 )
125X-RAY DIFFRACTION125chain 'a' and (resid 91 through 123 )
126X-RAY DIFFRACTION126chain 'b' and (resid 40 through 56 )
127X-RAY DIFFRACTION127chain 'b' and (resid 57 through 63 )
128X-RAY DIFFRACTION128chain 'b' and (resid 64 through 78 )
129X-RAY DIFFRACTION129chain 'b' and (resid 79 through 113 )
130X-RAY DIFFRACTION130chain 'b' and (resid 114 through 135 )
131X-RAY DIFFRACTION131chain 'c' and (resid 25 through 30 )
132X-RAY DIFFRACTION132chain 'c' and (resid 31 through 47 )
133X-RAY DIFFRACTION133chain 'c' and (resid 48 through 82 )
134X-RAY DIFFRACTION134chain 'c' and (resid 83 through 100 )
135X-RAY DIFFRACTION135chain 'd' and (resid 459 through 463 )
136X-RAY DIFFRACTION136chain 'd' and (resid 464 through 468 )
137X-RAY DIFFRACTION137chain 'd' and (resid 469 through 482 )
138X-RAY DIFFRACTION138chain 'd' and (resid 483 through 487 )
139X-RAY DIFFRACTION139chain 'e' and (resid 16 through 26 )
140X-RAY DIFFRACTION140chain 'e' and (resid 27 through 44 )
141X-RAY DIFFRACTION141chain 'e' and (resid 45 through 72 )
142X-RAY DIFFRACTION142chain 'e' and (resid 73 through 89 )
143X-RAY DIFFRACTION143chain 'e' and (resid 90 through 96 )
144X-RAY DIFFRACTION144chain 'e' and (resid 97 through 117 )
145X-RAY DIFFRACTION145chain 'f' and (resid 36 through 55 )
146X-RAY DIFFRACTION146chain 'f' and (resid 56 through 83 )
147X-RAY DIFFRACTION147chain 'f' and (resid 84 through 90 )
148X-RAY DIFFRACTION148chain 'f' and (resid 91 through 123 )
149X-RAY DIFFRACTION149chain 'g' and (resid 40 through 56 )
150X-RAY DIFFRACTION150chain 'g' and (resid 57 through 78 )
151X-RAY DIFFRACTION151chain 'g' and (resid 79 through 113 )
152X-RAY DIFFRACTION152chain 'g' and (resid 114 through 133 )
153X-RAY DIFFRACTION153chain 'h' and (resid 26 through 30 )
154X-RAY DIFFRACTION154chain 'h' and (resid 31 through 47 )
155X-RAY DIFFRACTION155chain 'h' and (resid 48 through 75 )
156X-RAY DIFFRACTION156chain 'h' and (resid 76 through 93 )
157X-RAY DIFFRACTION157chain 'h' and (resid 94 through 100 )
158X-RAY DIFFRACTION158chain 'i' and (resid 459 through 463 )
159X-RAY DIFFRACTION159chain 'i' and (resid 464 through 473 )
160X-RAY DIFFRACTION160chain 'i' and (resid 482 through 487 )
161X-RAY DIFFRACTION161chain 'j' and (resid 15 through 26 )
162X-RAY DIFFRACTION162chain 'j' and (resid 27 through 36 )
163X-RAY DIFFRACTION163chain 'j' and (resid 37 through 44 )
164X-RAY DIFFRACTION164chain 'j' and (resid 45 through 72 )
165X-RAY DIFFRACTION165chain 'j' and (resid 73 through 79 )
166X-RAY DIFFRACTION166chain 'j' and (resid 80 through 88 )
167X-RAY DIFFRACTION167chain 'j' and (resid 89 through 96 )
168X-RAY DIFFRACTION168chain 'j' and (resid 97 through 111 )
169X-RAY DIFFRACTION169chain 'j' and (resid 112 through 117 )
170X-RAY DIFFRACTION170chain 'k' and (resid 36 through 55 )
171X-RAY DIFFRACTION171chain 'k' and (resid 56 through 83 )
172X-RAY DIFFRACTION172chain 'k' and (resid 84 through 123 )
173X-RAY DIFFRACTION173chain 'l' and (resid 40 through 56 )
174X-RAY DIFFRACTION174chain 'l' and (resid 57 through 78 )
175X-RAY DIFFRACTION175chain 'l' and (resid 79 through 113 )
176X-RAY DIFFRACTION176chain 'l' and (resid 114 through 133 )
177X-RAY DIFFRACTION177chain 'm' and (resid 27 through 40 )
178X-RAY DIFFRACTION178chain 'm' and (resid 41 through 47 )
179X-RAY DIFFRACTION179chain 'm' and (resid 48 through 82 )
180X-RAY DIFFRACTION180chain 'm' and (resid 83 through 93 )
181X-RAY DIFFRACTION181chain 'm' and (resid 94 through 101 )
182X-RAY DIFFRACTION182chain 'n' and (resid 458 through 462 )
183X-RAY DIFFRACTION183chain 'n' and (resid 463 through 482 )
184X-RAY DIFFRACTION184chain 'n' and (resid 483 through 487 )

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