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- PDB-6rsi: cytochrome c co-crystallized with 25 eq. sulfonato-calix[8]arene ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6rsi | ||||||
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Title | cytochrome c co-crystallized with 25 eq. sulfonato-calix[8]arene - structure 0 | ||||||
![]() | Cytochrome c iso-1 | ||||||
![]() | ![]() ![]() ![]() ![]() | ||||||
Function / homology | ![]() Release of apoptotic factors from the mitochondria / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Engilberge, S. / Crowley, P.B. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Tuning Protein Frameworks via Auxiliary Supramolecular Interactions. Authors: Engilberge, S. / Rennie, M.L. / Dumont, E. / Crowley, P.B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 74.7 KB | Display | ![]() |
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PDB format | ![]() | 60.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 12041.770 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Gene: CYC1, YJR048W, J1653 / Production host: ![]() ![]() ![]() | ||||
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#2: Chemical | ChemComp-HEC / ![]() | ||||
#3: Chemical | #4: Chemical | ![]() #5: Water | ChemComp-HOH / | ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density % sol: 85 % / Description: red diamond |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: 0.10 M HEPES pH 7.5, 0.15 M NaCl, 2.20 M ammonium sulfate, 0.05 M sulfonato-calix[8]arene. |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Sep 21, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.48→71.64 Å / Num. obs: 16406 / % possible obs: 100 % / Redundancy: 26.1 % / Biso Wilson estimate: 71.82 Å2 / CC1/2: 0.998 / Rmerge(I) obs: 0.173 / Rpim(I) all: 0.035 / Rrim(I) all: 0.176 / Net I/σ(I): 14.9 |
Reflection shell | Resolution: 2.482→2.525 Å / Rmerge(I) obs: 1.666 / Mean I/σ(I) obs: 2.3 / Num. unique obs: 818 / CC1/2: 0.821 / Rpim(I) all: 0.334 / Rrim(I) all: 1.7 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Displacement parameters | Biso mean: 62.32 Å2
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Refine analyze | Luzzati coordinate error obs: 0.28 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: 1 / Resolution: 2.48→71.64 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.48→2.5 Å / Total num. of bins used: 42
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Refinement TLS params. | Method: refined / Origin x: -31.3305 Å / Origin y: -5.7948 Å / Origin z: -0.2489 Å
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Refinement TLS group | Selection details: { A|* } |