+Open data
-Basic information
Entry | Database: PDB / ID: 6hn1 | ||||||
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Title | Complex of Caprine Serum Albumin with diclofenac | ||||||
Components | Albumin | ||||||
Keywords | TRANSPORT PROTEIN / Caprine serum albumin / Goat serum albumin / diclofenac / nonsteroidal anti-inflammatory drugs | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Capra hircus (goat) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.55 Å | ||||||
Authors | Talaj, J.A. / Bujacz, A. / Bujacz, G. | ||||||
Funding support | Poland, 1items
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Citation | Journal: Int J Mol Sci / Year: 2023 Title: Structural Investigation of Diclofenac Binding to Ovine, Caprine, and Leporine Serum Albumins. Authors: Talaj, J.A. / Zielinski, K. / Bujacz, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6hn1.cif.gz | 275.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6hn1.ent.gz | 222.1 KB | Display | PDB format |
PDBx/mmJSON format | 6hn1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hn/6hn1 ftp://data.pdbj.org/pub/pdb/validation_reports/hn/6hn1 | HTTPS FTP |
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-Related structure data
Related structure data | 6hn0C 8bsgC 5oriS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 66412.797 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Capra hircus (goat) / References: UniProt: B3VHM9, UniProt: A0A452F7K4*PLUS | ||||
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#2: Chemical | ChemComp-DIF / #3: Chemical | ChemComp-CL / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45.11 % / Description: rhomboid prism |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: Jeffamine ED2001, citric buffer pH 5.0, BaCl2 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: BESSY / Beamline: 14.2 / Wavelength: 0.9184 Å |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Sep 24, 2014 |
Radiation | Monochromator: Si 1 1 1 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9184 Å / Relative weight: 1 |
Reflection | Resolution: 1.55→50 Å / Num. obs: 85408 / % possible obs: 97.9 % / Redundancy: 5.9 % / Biso Wilson estimate: 28.027 Å2 / CC1/2: 0.999 / Rmerge(I) obs: 0.049 / Net I/σ(I): 22.13 |
Reflection shell | Resolution: 1.55→1.65 Å / Redundancy: 4.3 % / Rmerge(I) obs: 0.726 / Mean I/σ(I) obs: 2.11 / Num. unique obs: 13473 / CC1/2: 0.669 / % possible all: 91.9 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 5ORI Resolution: 1.55→50 Å / Cor.coef. Fo:Fc: 0.97 / Cor.coef. Fo:Fc free: 0.943 / SU B: 5.833 / SU ML: 0.089 / Cross valid method: THROUGHOUT / ESU R: 0.099 / ESU R Free: 0.094 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 28.027 Å2
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Refinement step | Cycle: 1 / Resolution: 1.55→50 Å
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Refine LS restraints |
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