+Open data
-Basic information
Entry | Database: PDB / ID: 6gig | ||||||
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Title | Structural insights into AapA1 toxin | ||||||
Components | AapA1 | ||||||
Keywords | ANTITOXIN / Toxin peptide from Helicobacter pylori | ||||||
Function / homology | Uncharacterized protein Function and homology information | ||||||
Biological species | Helicobacter pylori (bacteria) | ||||||
Method | SOLUTION NMR / na | ||||||
Authors | Salgado, G.F. / Korkut, D.N. | ||||||
Funding support | France, 1items
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Citation | Journal: Biochim Biophys Acta Gen Subj / Year: 2020 Title: Structural insights into the AapA1 toxin of Helicobacter pylori. Authors: Korkut, D.N. / Alves, I.D. / Vogel, A. / Chabas, S. / Sharma, C.M. / Martinez, D. / Loquet, A. / Salgado, G.F. / Darfeuille, F. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6gig.cif.gz | 103.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6gig.ent.gz | 85.9 KB | Display | PDB format |
PDBx/mmJSON format | 6gig.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gi/6gig ftp://data.pdbj.org/pub/pdb/validation_reports/gi/6gig | HTTPS FTP |
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-Related structure data
Related structure data | 6gifC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3471.318 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Helicobacter pylori (bacteria) / References: UniProt: A0A1Y3E6H1 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 2 mM AapA1, 0.2 mM AapA1, trifluoroethanol/water Details: Sample in 40 % TFE, 10 mM acetic acid, 10 mM NaCl, 2 mM DTT at pH 4.7 Label: no / Solvent system: trifluoroethanol/water | ||||||||||||
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Sample |
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Sample conditions | Details: 50 mM / Ionic strength: 50 mM / Ionic strength err: 5 / Label: conditions_1 / pH: 4.5 / PH err: 0.1 / Pressure: 1 atm / Temperature: 303 K / Temperature err: 1 |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: na / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 1000 / Conformers submitted total number: 10 |