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Yorodumi- PDB-5vl6: Peptide 38138 modified from fragment 21-37 of Plasmodium falcipar... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5vl6 | ||||||
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Title | Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS) | ||||||
Components | Peptide 38138 | ||||||
Keywords | CELL INVASION / Modified peptide / Chemically synthesized / Pf-CelTOS / Alpha helix residues 8-14 | ||||||
Function / homology | Cell-traversal protein for ookinetes and sporozoites / Cell-traversal protein for ookinetes and sporozoites / Cell traversal protein for ookinetes and sporozoites Function and homology information | ||||||
Biological species | Plasmodium falciparum (malaria parasite P. falciparum) | ||||||
Method | SOLUTION NMR / DGSA-distance geometry simulated annealing | ||||||
Authors | Bermudez, A. / Patarroyo, M.E. | ||||||
Citation | Journal: To Be Published Title: Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS) Authors: Bermudez, A. / Patarroyo, M.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5vl6.cif.gz | 46.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5vl6.ent.gz | 31.5 KB | Display | PDB format |
PDBx/mmJSON format | 5vl6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vl/5vl6 ftp://data.pdbj.org/pub/pdb/validation_reports/vl/5vl6 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1873.959 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS) Source: (synth.) Plasmodium falciparum (malaria parasite P. falciparum) References: UniProt: Q8I5P1*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: NULL |
-Sample preparation
Details | Type: solution / Contents: 16.6 mg/mL 38138, trifluoroethanol/water Details: Peptide 38138 modified from fragment 21-37 of Plasmodium falciparum Cell-Traversal Protein for Ookinetes and Sporozoite (Pf-CelTOS) Label: 38138 / Solvent system: trifluoroethanol/water | ||||||||||||||||||||
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Sample | Conc.: 16.6 mg/mL / Component: 38138 / Isotopic labeling: natural abundance | ||||||||||||||||||||
Sample conditions | Ionic strength: NULL Not defined / pH: 3.7 / PH err: 0.1 / Pressure: AMBIENT ATM mmHg / Temperature err: 0.1
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-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing / Software ordinal: 1 / Details: 193 NOES | |||||||||
NMR representative | Selection criteria: lowest energy | |||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 9 |