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- PDB-5oc1: Crystal structure of aryl-alcohol oxidase from Pleurotus eryngii ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5oc1 | |||||||||
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Title | Crystal structure of aryl-alcohol oxidase from Pleurotus eryngii in complex with p-anisic acid | |||||||||
![]() | Aryl-alcohol oxidase![]() | |||||||||
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Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Carro, J. / Martinez-Julvez, M. / Medina, M. / Martinez, A. / Ferreira, P. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Protein dynamics promote hydride tunnelling in substrate oxidation by aryl-alcohol oxidase. Authors: Carro, J. / Martinez-Julvez, M. / Medina, M. / Martinez, A.T. / Ferreira, P. #1: ![]() Title: Novel structural features in the GMC family of oxidoreductases revealed by the crystal structure of fungal aryl-alcohol oxidase. Authors: Fernandez, I.S. / Duenas, F.J.R. / Santillana, E. / Ferreira, P. / Martinez, M.J. / Martinez, A.T. / Romero, A. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 132.7 KB | Display | ![]() |
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PDB format | ![]() | 99.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 3fimS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 60931.535 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() | ||
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#2: Chemical | ChemComp-ANN / ![]() | ||
#3: Chemical | ChemComp-FAD / ![]() | ||
#4: Chemical | ChemComp-GOL / ![]() #5: Water | ChemComp-HOH / | ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow![]() | Temperature: 292 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 0.1 M sodium acetate, pH 4.5 and 1.0 M di-ammonium hydrogen phosphate |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Aug 3, 2013 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.3→43.99 Å / Num. obs: 67615 / % possible obs: 100 % / Redundancy: 40.1 % / Rmerge(I) obs: 0.133 / Net I/σ(I): 28.1 |
Reflection shell | Resolution: 2.3→2.42 Å / Num. unique obs: 9716 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 3fim Resolution: 2.3→42.3 Å / Cor.coef. Fo:Fc: 0.958 / Cor.coef. Fo:Fc free: 0.95 / SU B: 3.558 / SU ML: 0.085 / Cross valid method: THROUGHOUT / ESU R: 0.134 / ESU R Free: 0.126 / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 32.931 Å2
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Refinement step | Cycle: 1 / Resolution: 2.3→42.3 Å
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Refine LS restraints |
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