Entry Database : PDB / ID : 5hs9 Structure visualization Downloads & linksTitle Crystal structure of the quinone-bound YodB from B. subtilis ComponentsHTH-type transcriptional regulator YodB Details Keywords DNA BINDING PROTEIN / HTH-type transcriptional regulator / oxidized formFunction / homology Function and homology informationFunction Domain/homology Component
DNA-binding transcription repressor activity / protein-DNA complex / transcription cis-regulatory region binding / negative regulation of DNA-templated transcription Similarity search - Function Helix-turn-helix, HxlR type / HxlR-like helix-turn-helix / HxlR-type HTH domain profile. / ArsR-like helix-turn-helix domain / Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain / Arc Repressor Mutant, subunit A / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily / Orthogonal Bundle / Mainly Alpha Similarity search - Domain/homologyBiological species Bacillus subtilis (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.1 Å DetailsAuthors Lee, S.J. / Lee, I.G. / Lee, B.J. Funding support Korea, Republic Of, 3items Details Hide detailsOrganization Grant number Country National Research Foundation of Korea NRF-2015R1A2A1A05001894 Korea, Republic Of National Research Foundation of Korea NRF-2013R1A1A2062813 Korea, Republic Of the Innovative Drug Research Center for Metabolic and Inflammatory Disease NRF-2007-0057059 Korea, Republic Of
CitationJournal : Proc.Natl.Acad.Sci.USA / Year : 2016Title : Two distinct mechanisms of transcriptional regulation by the redox sensor YodBAuthors : Lee, S.J. / Lee, I.G. / Lee, K.Y. / Kim, D.G. / Eun, H.J. / Yoon, H.J. / Chae, S. / Song, S.H. / Kang, S.O. / Seo, M.D. / Kim, H.S. / Park, S.J. / Lee, B.J. History Deposition Jan 25, 2016 Deposition site : RCSB / Processing site : PDBJRevision 1.0 Aug 17, 2016 Provider : repository / Type : Initial releaseRevision 1.1 Sep 14, 2016 Group : Database referencesRevision 1.2 Nov 8, 2023 Group : Data collection / Database references ... Data collection / Database references / Derived calculations / Refinement description Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / citation / database_2 / pdbx_initial_refinement_model / pdbx_struct_oper_list Item : _citation.journal_id_CSD / _database_2.pdbx_DOI ... _citation.journal_id_CSD / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_oper_list.symmetry_operation
Show all Show less