Type: MARMOSAIC 300 mm CCD / Detector: CCD / Date: Aug 15, 2015
Radiation
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9798 Å / Relative weight: 1
Reflection
Resolution: 1.8→47.36 Å / Num. obs: 96059 / % possible obs: 97.1 % / Redundancy: 1.8 % / Net I/σ(I): 7.9
-
Processing
Software
Name
Version
Classification
PHENIX
1.9_1692
refinement
HKL-2000
datareduction
HKL-2000
datascaling
PHENIX
phasing
Refinement
Method to determine structure: SAD / Resolution: 1.8→33.856 Å / SU ML: 0.19 / Cross valid method: THROUGHOUT / σ(F): 1.36 / Phase error: 20.66 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.1917
2623
4.94 %
Random selection
Rwork
0.1693
-
-
-
obs
0.1704
53065
97.06 %
-
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement step
Cycle: LAST / Resolution: 1.8→33.856 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
3677
0
0
638
4315
Refine LS restraints
Refine-ID
Type
Dev ideal
Number
X-RAY DIFFRACTION
f_bond_d
0.007
3737
X-RAY DIFFRACTION
f_angle_d
1.033
5069
X-RAY DIFFRACTION
f_dihedral_angle_d
11.789
1349
X-RAY DIFFRACTION
f_chiral_restr
0.043
606
X-RAY DIFFRACTION
f_plane_restr
0.005
648
LS refinement shell
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
Refine-ID
% reflection obs (%)
1.8-1.8327
0.2888
136
0.2431
2632
X-RAY DIFFRACTION
95
1.8327-1.868
0.2414
125
0.2228
2627
X-RAY DIFFRACTION
96
1.868-1.9061
0.2384
126
0.2109
2616
X-RAY DIFFRACTION
96
1.9061-1.9476
0.2669
127
0.2078
2671
X-RAY DIFFRACTION
96
1.9476-1.9929
0.2411
142
0.1976
2637
X-RAY DIFFRACTION
97
1.9929-2.0427
0.1894
135
0.1809
2642
X-RAY DIFFRACTION
96
2.0427-2.0979
0.2181
136
0.1833
2621
X-RAY DIFFRACTION
97
2.0979-2.1596
0.2078
144
0.1725
2678
X-RAY DIFFRACTION
97
2.1596-2.2293
0.192
159
0.1664
2636
X-RAY DIFFRACTION
97
2.2293-2.309
0.2106
162
0.1669
2615
X-RAY DIFFRACTION
97
2.309-2.4014
0.1978
133
0.1703
2670
X-RAY DIFFRACTION
97
2.4014-2.5107
0.2209
159
0.1771
2674
X-RAY DIFFRACTION
98
2.5107-2.643
0.2111
118
0.1738
2690
X-RAY DIFFRACTION
98
2.643-2.8085
0.199
127
0.1747
2677
X-RAY DIFFRACTION
98
2.8085-3.0252
0.1858
162
0.177
2685
X-RAY DIFFRACTION
98
3.0252-3.3294
0.2153
123
0.1705
2723
X-RAY DIFFRACTION
99
3.3294-3.8106
0.1586
121
0.1507
2690
X-RAY DIFFRACTION
99
3.8106-4.7988
0.144
139
0.1351
2681
X-RAY DIFFRACTION
98
4.7988-33.8622
0.1742
149
0.1716
2577
X-RAY DIFFRACTION
95
Refinement TLS params.
Method: refined / Origin x: -19.6834 Å / Origin y: -23.8732 Å / Origin z: -59.8227 Å
11
12
13
21
22
23
31
32
33
T
0.0975 Å2
0.0171 Å2
0.0098 Å2
-
0.0677 Å2
0.0014 Å2
-
-
0.1165 Å2
L
0.4068 °2
0.0944 °2
0.007 °2
-
0.1128 °2
-0.1257 °2
-
-
1.4617 °2
S
0.0516 Å °
-0.0004 Å °
-0.018 Å °
0.0162 Å °
0.051 Å °
0.0114 Å °
-0.1704 Å °
-0.0797 Å °
0.0564 Å °
Refinement TLS group
Selection details: all
+
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