+Open data
-Basic information
Entry | Database: PDB / ID: 5cyt | ||||||||||||
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Title | REFINEMENT OF MYOGLOBIN AND CYTOCHROME C | ||||||||||||
Components | CYTOCHROME C | ||||||||||||
Keywords | ELECTRON TRANSPORT (HEME PROTEIN) | ||||||||||||
Function / homology | Function and homology information respirasome / mitochondrial intermembrane space / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||||||||
Biological species | Thunnus alalunga (albacore) | ||||||||||||
Method | X-RAY DIFFRACTION / Resolution: 1.5 Å | ||||||||||||
Authors | Takano, T. | ||||||||||||
Citation | Journal: Methods and Applications in Crystallographic Computing Year: 1984 Title: Refinement of Myoglobin and Cytochrome C Authors: Takano, T. #1: Journal: J.Mol.Biol. / Year: 1981 Title: Conformation Change of Cytochrome C. I. Ferrocytochrome C Structure Refined at 1.5 Angstroms Resolution Authors: Takano, T. / Dickerson, R.E. #2: Journal: J.Mol.Biol. / Year: 1981 Title: Conformation Change of Cytochrome C. II. Ferricytochrome C Refinement at 1.8 Angstroms and Comparison with the Ferrocytochrome Structure Authors: Takano, T. / Dickerson, R.E. #3: Journal: Proc.Natl.Acad.Sci.USA / Year: 1980 Title: Redox Conformation Changes in Refined Tuna Cytochrome C Authors: Takano, T. / Dickerson, R.E. #4: Journal: Sci.Am. / Year: 1980 Title: Cytochrome C and the Evolution of Energy Metabolism Authors: Dickerson, R.E. #5: Journal: Nature / Year: 1980 Title: Internal Mobility of Ferrocytochrome C Authors: Northrup, S.H. / Pear, M.R. / Mccammon, J.A. / Karplus, M. / Takano, T. #6: Journal: J.Biol.Chem. / Year: 1977 Title: Tuna Cytochrome C at 2.0 Angstroms Resolution. II. Ferrocytochrome Structure Analysis Authors: Takano, T. / Trus, B.L. / Mandel, N. / Mandel, G. / Kallai, O.B. / Swanson, R. / Dickerson, R.E. #7: Journal: J.Biol.Chem. / Year: 1977 Title: Tuna Cytochrome C at 2.0 Angstroms Resolution. I. Ferricytochrome Structure Analysis Authors: Swanson, R. / Trus, B.L. / Mandel, N. / Mandel, G. / Kallai, O.B. / Dickerson, R.E. #8: Journal: J.Biol.Chem. / Year: 1973 Title: The Structure of Ferrocytochrome C at 2.45 Angstroms Resolution Authors: Takano, T. / Kallai, O.B. / Swanson, R. / Dickerson, R.E. #9: Journal: Sci.Am. / Year: 1972 Title: The Structure and History of an Ancient Protein Authors: Dickerson, R.E. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5cyt.cif.gz | 32.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5cyt.ent.gz | 24.9 KB | Display | PDB format |
PDBx/mmJSON format | 5cyt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cy/5cyt ftp://data.pdbj.org/pub/pdb/validation_reports/cy/5cyt | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 11416.114 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thunnus alalunga (albacore) / References: UniProt: P81459 |
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#2: Chemical | ChemComp-HEC / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 49.83 % |
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-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||
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Refinement | Rfactor Rwork: 0.159 / Highest resolution: 1.5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.5 Å
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