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- PDB-4w6o: Crystal Structure of Full-Length Split GFP Mutant D117C Disulfide... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4w6o | ||||||
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Title | Crystal Structure of Full-Length Split GFP Mutant D117C Disulfide Dimer, P 64 2 2 Space Group | ||||||
![]() | fluorescent protein D117C![]() | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() ![]() ![]() ![]() | ||||||
Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Leibly, D.J. / Waldo, G.S. / Yeates, T.O. | ||||||
Funding support | ![]()
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![]() | ![]() Title: A Suite of Engineered GFP Molecules for Oligomeric Scaffolding. Authors: Leibly, D.J. / Arbing, M.A. / Pashkov, I. / DeVore, N. / Waldo, G.S. / Terwilliger, T.C. / Yeates, T.O. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 101.6 KB | Display | ![]() |
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PDB format | ![]() | 77.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 4w69C ![]() 4w6aC ![]() 4w6bC ![]() 4w6cC ![]() 4w6dC ![]() 4w6fC ![]() 4w6gC ![]() 4w6hC ![]() 4w6iC ![]() 4w6jC ![]() 4w6kC ![]() 4w6lC ![]() 4w6mC ![]() 4w6nC ![]() 4w6pC ![]() 4w6rC ![]() 4w6sC ![]() 4w6tC ![]() 4w6uC ![]() 4w72C ![]() 4w73C ![]() 4w74C ![]() 4w75C ![]() 4w76C ![]() 4w77C ![]() 4w7aC ![]() 4w7cC ![]() 4w7dC ![]() 4w7eC ![]() 4w7fC ![]() 4w7rC ![]() 4w7xC ![]() 2b3pS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | ![]() Mass: 26816.193 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Production host: ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.93 Å3/Da / Density % sol: 57.95 % |
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8.5 / Details: 20% PEG6000, 0.1M Bicine pH 8.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M-F / Detector: PIXEL / Date: Aug 9, 2013 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.6→67.51 Å / Num. obs: 10518 / % possible obs: 99.9 % / Redundancy: 15.3 % / Rsym value: 0.07197 / Net I/σ(I): 25.97 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 2B3P Resolution: 2.6→67.51 Å / SU ML: 0.41 / Cross valid method: FREE R-VALUE / σ(F): 1.38 / Phase error: 35.03 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→67.51 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: 20.1666 Å / Origin y: 72.0213 Å / Origin z: 14.1499 Å
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Refinement TLS group | Selection details: (CHAIN A AND RESSEQ 3:226) |