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Yorodumi- PDB-4s26: Crystal structure of Arabidopsis thaliana ThiC with bound imidazo... -
+Open data
-Basic information
Entry | Database: PDB / ID: 4s26 | ||||||
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Title | Crystal structure of Arabidopsis thaliana ThiC with bound imidazole ribonucleotide, S-adenosylhomocysteine, Fe4S4 cluster and Zn (monoclinic crystal form) | ||||||
Components | Phosphomethylpyrimidine synthase, chloroplastic | ||||||
Keywords | LYASE / Alpha-Beta Barrel / Radical SAM superfamily / Iron-sulfur cluster / Thiamin / Vitamin B1 / Vitamin B12 / Domain swapping / AdoMet and Glutamate mutase | ||||||
Function / homology | Function and homology information phosphomethylpyrimidine synthase / response to vitamin B1 / carbon-carbon lyase activity / thiamine diphosphate biosynthetic process / thiamine biosynthetic process / plastid / chloroplast stroma / iron-sulfur cluster binding / chloroplast / 4 iron, 4 sulfur cluster binding ...phosphomethylpyrimidine synthase / response to vitamin B1 / carbon-carbon lyase activity / thiamine diphosphate biosynthetic process / thiamine biosynthetic process / plastid / chloroplast stroma / iron-sulfur cluster binding / chloroplast / 4 iron, 4 sulfur cluster binding / protein domain specific binding / metal ion binding / cytosol Similarity search - Function | ||||||
Biological species | Arabidopsis thaliana (thale cress) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.85 Å | ||||||
Authors | Fenwick, M.K. / Mehta, A.P. / Zhang, Y. / Abdelwahed, S. / Begley, T.P. / Ealick, S.E. | ||||||
Citation | Journal: Nat Commun Title: Non-canonical active site architecture of the radical SAM thiamin pyrimidine synthase. Authors: Fenwick, M.K. / Mehta, A.P. / Zhang, Y. / Abdelwahed, S.H. / Begley, T.P. / Ealick, S.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4s26.cif.gz | 231.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4s26.ent.gz | 179.1 KB | Display | PDB format |
PDBx/mmJSON format | 4s26.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/s2/4s26 ftp://data.pdbj.org/pub/pdb/validation_reports/s2/4s26 | HTTPS FTP |
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-Related structure data
Related structure data | 4s25C 4s27C 4s28C 4s29C 4s2aC 4n7qS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
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-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1
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