+Open data
-Basic information
Entry | Database: PDB / ID: 4mnn | ||||||
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Title | The crystal structure of Sso1120 from Sulfolobus solfataricus | ||||||
Components | Glutaredoxin related protein | ||||||
Keywords | OXIDOREDUCTASE / Thioredoxin fold / Protein Disulfide Oxidoreductase and Disulfide bond | ||||||
Function / homology | Glutaredoxin - #80 / Thioredoxin domain / : / Thioredoxin-like fold / Glutaredoxin / Thioredoxin-like superfamily / 3-Layer(aba) Sandwich / Alpha Beta / Glutaredoxin related protein Function and homology information | ||||||
Biological species | Sulfolobus solfataricus (archaea) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.8 Å | ||||||
Authors | D'Ambrosio, K. / De Simone, G. | ||||||
Citation | Journal: Extremophiles / Year: 2014 Title: Sulfolobus solfataricus thiol redox puzzle: characterization of an atypical protein disulfide oxidoreductase. Authors: Limauro, D. / De Simone, G. / Pirone, L. / Bartolucci, S. / D'Ambrosio, K. / Pedone, E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4mnn.cif.gz | 51.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4mnn.ent.gz | 36 KB | Display | PDB format |
PDBx/mmJSON format | 4mnn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mn/4mnn ftp://data.pdbj.org/pub/pdb/validation_reports/mn/4mnn | HTTPS FTP |
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-Related structure data
Related structure data | 2aytS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 21024.918 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Sulfolobus solfataricus (archaea) / Strain: ATCC 35092 / DSM 1617 / JCM 11322 / P2 / Gene: SSO1120 / Production host: Escherichia coli (E. coli) / References: UniProt: Q97Z21 |
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#2: Chemical | ChemComp-GOL / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.21 Å3/Da / Density % sol: 44.33 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6 Details: 13 % PEG 20000, 0.1 M MES buffer, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ELETTRA / Beamline: 5.2R / Wavelength: 1.1 Å |
Detector | Type: MAR CCD 165 mm / Detector: CCD / Date: May 15, 2008 |
Radiation | Monochromator: GRAPHITE / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.1 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→50 Å / Num. all: 17444 / Num. obs: 17444 / % possible obs: 98.7 % / Redundancy: 5.4 % / Rmerge(I) obs: 0.037 / Net I/σ(I): 35 |
Reflection shell | Resolution: 1.8→1.86 Å / Redundancy: 4.9 % / Rmerge(I) obs: 0.188 / Mean I/σ(I) obs: 4.5 / Num. unique all: 1594 / % possible all: 90 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: pdb entry 2AYT Resolution: 1.8→20 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 1.8→20 Å
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Refine LS restraints |
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