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Open data
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Basic information
Entry | Database: PDB / ID: 4dzn | ||||||
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Title | A de novo designed Coiled Coil CC-pIL | ||||||
![]() | COILED-COIL PEPTIDE CC-PIL | ||||||
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Biological species | synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Bruning, M. / Thomson, A.R. / Zaccai, N.R. / Brady, R.L. / Woolfson, D.N. | ||||||
![]() | ![]() Title: A basis set of de novo coiled-coil Peptide oligomers for rational protein design and synthetic biology. Authors: Fletcher, J.M. / Boyle, A.L. / Bruning, M. / Bartlett, G.J. / Vincent, T.L. / Zaccai, N.R. / Armstrong, C.T. / Bromley, E.H. / Booth, P.J. / Brady, R.L. / Thomson, A.R. / Woolfson, D.N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.6 KB | Display | ![]() |
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PDB format | ![]() | 39.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein/peptide | Mass: 3650.072 Da / Num. of mol.: 3 / Source method: obtained synthetically / Details: Solid state peptide synthesis / Source: (synth.) synthetic construct (others) #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.02 Å3/Da / Density % sol: 39.12 % |
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Crystal grow![]() | Temperature: 291 K / Method: vapor diffusion, sitting drop / pH: 8.5 Details: 0.2 M NH4H2PO4, 0.1 M Tris, 50% v/v MPD, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Oct 10, 2010 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.59→43.72 Å / Num. obs: 11991 / % possible obs: 96.1 % / Observed criterion σ(I): 4.6 |
Reflection shell | Resolution: 1.6→1.7 Å / % possible all: 95.4 |
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Processing
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Refinement | Method to determine structure![]() ![]() Resolution: 1.59→43.72 Å / Cor.coef. Fo:Fc: 0.958 / Cor.coef. Fo:Fc free: 0.95 / SU B: 3.392 / SU ML: 0.053 / Cross valid method: THROUGHOUT / ESU R: 0.117 / ESU R Free: 0.088 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 12.405 Å2
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Refinement step | Cycle: LAST / Resolution: 1.59→43.72 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.593→1.634 Å / Total num. of bins used: 20
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