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- PDB-3gyw: Crystal structure of nucleosome assembly protein from Plasmodium ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 3gyw | ||||||
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Title | Crystal structure of nucleosome assembly protein from Plasmodium falciparum at 2.4 A resolution | ||||||
![]() | Nucleosome assembly protein 1, putative | ||||||
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Function / homology | ![]() somatic cell DNA recombination / ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Yogavel, M. / Gill, J. / Sharma, A. | ||||||
![]() | ![]() Title: Iodide-SAD, SIR and SIRAS phasing for structure solution of a nucleosome assembly protein. Authors: Yogavel, M. / Gill, J. / Sharma, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 51.3 KB | Display | ![]() |
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PDB format | ![]() | 35.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 29667.742 Da / Num. of mol.: 1 / Fragment: residues 33-281 (UNP residues 45-293) Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Strain: 3D7 / Gene: pfl0185c / Plasmid: PET28A / Production host: ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.9 Å3/Da / Density % sol: 35.19 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7.6 Details: 20% PEG 3350, 0.2M magnesium chloride, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Nov 8, 2006 / Details: mirrors |
Radiation | Monochromator: GRAPHITE / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.4→50 Å / Num. all: 8943 / Num. obs: 8943 / % possible obs: 100 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 2.4 % / Rmerge(I) obs: 0.04 / Net I/σ(I): 37.6 |
Reflection shell | Resolution: 2.4→2.49 Å / Redundancy: 2.4 % / Rmerge(I) obs: 0.206 / Mean I/σ(I) obs: 8.1 / Num. unique all: 892 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Refinement step | Cycle: LAST / Resolution: 2.4→50 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.4→2.462 Å
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